The following commit has been merged in the master branch:
commit a28dd0fecb086a5837f7dfe39dd2f56dd1896350
Author: Andreas Tille <[email protected]>
Date: Tue Jan 24 10:14:27 2017 +0100
Prepare next upload
diff --git a/debian/changelog b/debian/changelog
index dc5d97b..6e2d7f0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -13,6 +13,244 @@ debian-science (1.6) UNRELEASED; urgency=medium
[ Ralf Treinen ]
* Drop package "confluence" from the electronics task
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-economics
+ added:
+ Depends: r-cran-dynlm, python3-numpy | python-numpy,
+ python3-pandas | python-pandas, r-cran-isocodes,
+ python3-simpy | python-simpy, python3-scipy | python-scipy,
+ r-cran-nleqslv, python3-matplotlib | python-matplotlib
+ removed:
+ Depends: python-simpy, python-matplotlib, python-numpy, python-pandas,
+ python-scipy
+ -science-robotics
+ added:
+ Depends: ros-perception, ros-desktop, ros-simulators, gazebo7,
+ ros-desktop-full
+ Suggests: gnuplot
+ removed:
+ Depends: roslang, python-roscreate, python-rosunit, ros-mk, rosbuild,
+ python-rosmake, python-rosclean, gazebo5, rosbash
+ Suggests: gnuplot | gnuplot5
+ -science-robotics-dev
+ added:
+ Depends: libignition-msgs-dev, libpcl-dev, ros-desktop-full-lisp-dev,
+ ros-desktop-dev, ros-simulators-dev,
+ ros-desktop-full-python-dev, libsdformat4-dev,
+ ros-desktop-full-dev, ros-perception-dev, libgazebo7-dev,
+ libkido-dev
+ removed:
+ Depends: libgazebo5-dev, libsdformat-dev
+ -science-simulations
+ added:
+ Depends: openfoam, python-pysph, gazebo7,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi
+ removed:
+ Depends: freefoam, pysph
+ -science-viewing-dev
+ added:
+ Depends: libglm-dev, libforge-dev, libgli-dev, libslvs1-dev,
+ libglbinding-dev, libglobjects-dev,
+ python3-matplotlib-venn | python-matplotlib-venn,
+ libgtkdatabox-dev
+ removed:
+ Depends: libgtkdatabox-0.9.2-0-dev
+ -science-tools
+ added:
+ Depends: science-workflow, hdf-compass,
+ python3-pybind11 | python-pybind11,
+ python3-hdf5storage | python-hdf5storage,
+ python3-h5py | python-h5py
+ Suggests: python3-pydap | python-pydap
+ removed:
+ Depends: python-h5py | python3-h5py, cwltool, snakemake, pegasus-wms,
+ python-hdf5storage | python3-hdf5storage
+ -science-geography
+ added:
+ Depends: r-cran-fields, hydroffice.bag-tools,
+ python3-cartopy | python-cartopy, r-cran-raster
+ -science-linguistics
+ added:
+ Depends: hfst, lttoolbox, uctodata, python3-pynlpl | python-pynlpl,
+ giella-sme, hfst-ospell
+ Suggests: apertium-mk-en, apertium-en-gl, apertium-id-ms, r-cran-tm,
+ apertium-eo-fr, apertium-isl, apertium-kaz-tat, apertium-srd,
+ apertium-is-sv, apertium-spa, apertium-ca-it, apertium-urd,
+ apertium-hbs-slv, apertium-hin, apertium-sme-nob,
+ apertium-eu-en, apertium-es-ast, apertium-spa-arg,
apertium-tat,
+ apertium-eo-en, apertium-kaz, apertium-arg, apertium-ita,
+ apertium-mk-bg, apertium-es-it, apertium-hbs-mkd,
+ apertium-swe-nor, apertium-hbs-eng, apertium-srd-ita,
+ python3-nltk | python-nltk, apertium-mlt-ara, apertium-isl-eng,
+ apertium-hbs, apertium-urd-hin, apertium-arg-cat
+ removed:
+ Suggests: python-nltk, python3-nltk
+ -science-statistics
+ added:
+ Depends: r-cran-modelmetrics, r-cran-lavaan, r-cran-sem, r-cran-qvcalc,
+ r-cran-geepack, r-cran-ca, r-cran-gam,
r-cran-randomfieldsutils,
+ r-cran-glmnet, r-cran-raschsampler, r-cran-erm, r-cran-caret,
+ r-cran-reshape2, r-cran-arm, r-cran-nmf, r-cran-goftest,
+ r-cran-maptree, r-cran-ggplot2
+ Suggests: r-cran-minpack.lm, r-cran-luminescence, r-cran-princurve,
+ r-cran-rngtools, r-cran-bbmle, r-cran-ellipse, r-cran-irlba,
+ r-cran-mlmrev
+ -science-imageanalysis
+ removed:
+ Depends: python-imageio
+ -science-machine-learning
+ added:
+ Depends: torch-core-free, r-cran-mlbench, libmlpack-dev,
+ caffe-cpu | caffe-cuda
+ -science-mathematics-dev
+ added:
+ Depends: python3-pynfft | python-pynfft, python3-numpy | python-numpy,
+ libprimesieve6-dev, python3-dtcwt | python-dtcwt,
+ python3-pyoperators | python-pyoperators, libflint-arb-dev,
+ cppad, python3-numexpr | python-numexpr, libsopt-dev,
+ python3-pyviennacl | python-pyviennacl, librw-dev,
+ python3-gimmik, python3-linop | python-linop
+ Suggests: libdune-functions-dev, libdune-pdelab-dev, libcblas-dev,
+ libdune-grid-glue-dev, sollya, libsollya-dev,
+ libdune-typetree-dev, libdune-uggrid-dev
+ removed:
+ Depends: python-pyoperators | python3-pyoperators, python3-pyviennacl,
+ ufc, python-fftw3 | python3-fftw3, python-dtcwt |
python3-dtcwt,
+ python-numpy, python-ufc, libprimesieve5-dev,
+ python-pyfftw | python3-pyfftw, python-pynfft | python3-pynfft,
+ python-linop | python3-linop, libsymmetrica-dev,
+ python-pyviennacl, python-numexpr | python3-numexpr,
+ python-ferari
+ -science-mathematics
+ added:
+ Depends: sagemath-database-mutually-combinatorial-designs, flintqs,
+ rubiks, maxima-sage, planarity
+ Suggests: sagetex
+ -science-electronics
+ removed:
+ Depends: confluence
+ -science-numericalcomputation
+ added:
+ Depends: python3-numpy | python-numpy, pyzo,
+ python3-arrayfire | python-arrayfire,
+ python3-guiqwt | python-guiqwt,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi, python-pysph,
+ python3-tables | python-tables, python3-deap | python-deap,
+ python3-bitstring | python-bitstring,
+ python3-scipy | python-scipy, libppl-dev, libclsparse-dev,
+ python3-matplotlib | python-matplotlib,
+ python3-theano | python-theano, librsb-dev,
+ python3-lmfit | python-lmfit
+ Suggests: theano-doc, libcblas-dev, python3-bcolz
+ removed:
+ Depends: python-matplotlib, libcompute-dev,
+ python-lmfit | python3-lmfit, python-numpy, python-scipy,
+ python-deap, python-bitstring | python3-bitstring,
+ python-guiqwt, python-arrayfire | python3-arrayfire,
+ python-tables | python3-tables, pysph
+ -science-typesetting
+ added:
+ Depends: pandoc-citeproc, r-cran-knitr,
+ texmaker | kile | lyx | texmacs | auctex | vim-latexsuite |
+ texstudio, sagetex, pandoc
+ Suggests: r-cran-shape, r-cran-gridbase, r-cran-highr, r-cran-scatterd3
+ removed:
+ Depends: texmacs, lyx, auctex
+ Suggests: texmaker
+ -science-engineering-dev
+ added:
+ Depends: python3-pynfft | python-pynfft
+ Suggests: libgtkdatabox-dev
+ removed:
+ Depends: libfreefoam-dev, python-pynfft | python3-pynfft,
+ python-fftw3 | python3-fftw3, syfi-dev
+ Suggests: libgtkdatabox-0.9.2-0-dev
+ -science-viewing
+ added:
+ Depends: rlplot, gnuplot, solvespace
+ Suggests: r-cran-qqman, r-cran-shape
+ removed:
+ Depends: python-viper, python-matplotlib-venn | python3-matplotlib-venn,
+ gnuplot | gnuplot5
+ -science-physics-dev
+ added:
+ Depends: python3-multipletau | python-multipletau,
+ python3-pynfft | python-pynfft
+ removed:
+ Depends: python-pyfftw | python3-pyfftw, libfreefoam-dev,
+ python-pynfft | python3-pynfft, python-fftw3 | python3-fftw3,
+ python-multipletau | python3-multipletau
+ -science-dataacquisition-dev
+ added:
+ Depends: liblog4tango-dev, libsdsl-dev, libtango-dev
+ removed:
+ Depends: liblog4tango5-dev, libtango8-dev
+ -science-nanoscale-physics-dev
+ added:
+ Suggests: libcblas-dev
+ -science-geometry
+ added:
+ Suggests: rubiks
+ -science-physics
+ added:
+ Depends: pyfr
+ removed:
+ Depends: freefoam
+ -science-meteorology
+ added:
+ Depends: python3-netcdf4, python-metaconfig, python3-gsw, python3-cdo,
+ metview, python3-metaconfig, python-iapws, python3-iapws,
+ cmor-tables, cdftools, flexpart, python-gsw,
+ libeccodes-api-tools, python3-sphere, fcm, python3-drslib,
+ python3-cmor, python3-eccodes, makedepf90, libemos-bin,
flextra,
+ python3-ferret, cylc, python-ferret, python-cdo
+ Suggests: geonetwork
+ removed:
+ Depends: freefoam, libgrib-api-tools, visit, geonetwork,
+ cmip5-cmor-tables
+ -science-engineering
+ added:
+ Depends: openfoam,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi, solvespace, scram
+ removed:
+ Depends: freefoam
+ -science-nanoscale-physics
+ added:
+ Depends: gnuplot, python3-lmfit | python-lmfit
+ removed:
+ Depends: python-lmfit | python3-lmfit, gnuplot | gnuplot5
+ -science-imageanalysis-dev
+ added:
+ Depends: python3-imageio | python-imageio
+ removed:
+ Depends: python-imageio
+ -science-logic
+ added:
+ Depends: z3, why3, why
+ removed:
+ Recommends: otter
+ -science-chemistry
+ added:
+ Depends: openfoam
+ removed:
+ Depends: freefoam
+ -science-meteorology-dev
+ added:
+ Depends: libeccodes-tools, libmagics++-dev, mpi-defaults-dev,
+ libeccodes-dev, libcdi-dev, libcoarrays-bin, libcoarrays-dev,
+ libaec-dev
+ Suggests: python3-coards | python-coards, libcblas-dev, udunits-bin
+ removed:
+ Depends: libfreefoam-dev, libgrib-api-tools, libgrib-api-dev
+ * New metapackages:
+ -science-astronomy
+ -science-astronomy-dev
+
-- Ralf Treinen <[email protected]> Mon, 19 Dec 2016 08:14:34 +0100
debian-science (1.5) unstable; urgency=medium
diff --git a/dependency_data/debian-science_1.6.json
b/dependency_data/debian-science_1.6.json
new file mode 100644
index 0000000..4ee3855
--- /dev/null
+++ b/dependency_data/debian-science_1.6.json
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting",
"science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer",
"xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit",
"amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin",
"python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2",
"python-nipy", "python-nipype", "python-nitime", "python-dipy",
"openwalnut-qt4", "nifti2dicom", "qnifti2dicom", "caret", "python-pyepl",
"praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni",
"mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron",
"itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr",
"mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology":
{"ignore": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage",
"r-base", "octave-octcdf", "gerris", "python-openturns", "python-dap"],
"depends": ["libemos-bin", "cdo", "nco", "dballe", "zygr
ib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "fcm",
"makedepf90", "flextra", "flexpart", "magics++", "cylc",
"libeccodes-api-tools", "ecaccess", "ncl", "python-cdo", "python3-cdo",
"python-netcdf", "python3-netcdf4", "python-grib", "python3-eccodes",
"python-drslib", "python3-drslib", "python-metaconfig", "python3-metaconfig",
"python-gsw", "python3-gsw", "python-iapws", "python3-iapws", "python-cmor",
"python3-cmor", "python-ferret", "python3-ferret", "python-sphere",
"python3-sphere", "cmor-tables", "aweather", "libdap-bin", "libdap-doc",
"vistrails"], "recommends": [], "avoid": []}, "financial": {"ignore": [],
"suggests": [], "depends": ["r-cran-fasianoptions", "r-cran-fassets",
"r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions",
"r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar",
"r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression",
"r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeser
ies", "r-cran-fportfolio"], "recommends": [], "avoid": []}, "robotics":
{"ignore": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime",
"libvtk5.4", "octave", "gnuplot"], "depends": ["rtai", "xenomai-runtime",
"morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player",
"d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl",
"orocos-ocl", "orocos-bfl", "ros-desktop-full", "ros-desktop",
"ros-perception", "ros-simulators", "openrtm", "openhrp", "pcl", "gazebo7",
"openrave", "octomap-tools", "octovis"], "recommends": [], "avoid": []},
"robotics-dev": {"ignore": [], "suggests": ["visp-images-data"], "depends":
["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev",
"libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev",
"liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev",
"libsdformat4-dev", "libconsole-bridge-dev", "libcomedi-dev",
"python-comedilib", "libccd-dev", "libgazebo7-dev", "libsimbody-dev", "libignit
ion-transport-dev", "libignition-math2-dev", "libignition-msgs-dev",
"libkido-dev", "ros-desktop-full-dev", "ros-desktop-dev", "ros-perception-dev",
"ros-simulators-dev", "ros-desktop-full-python-dev",
"ros-desktop-full-lisp-dev", "libpcl-dev"], "recommends": [], "avoid": []},
"highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc",
"lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib",
"cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm",
"nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo",
"geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf",
"root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34",
"libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34",
"libroot-io-xmlparser5.34", "libroot-math-mathmore5.34",
"libroot-math-unuran5.34", "libroot-misc-memstat5.34",
"libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34",
"libroot-proof-clarens5.34", "li
broot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34",
"libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34",
"libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34",
"libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34",
"libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34",
"libroot-math-genvector5.34", "libroot-math-mathcore5.34",
"libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34",
"libroot-math-physics5.34", "libroot-math-quadp5.34",
"libroot-math-smatrix5.34", "libroot-math-splot5.34",
"libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34",
"libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34",
"libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34",
"libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34",
"root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt",
"root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-mat
h-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus",
"root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql",
"root-plugin-sql-odbc", "root-plugin-sql-pgsql",
"root-plugin-geom-geombuilder", "root-plugin-geom-geompainter",
"root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel",
"root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer",
"root-plugin-hist-hbook", "root-plugin-hist-histpainter",
"root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml",
"root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd",
"root-system-rootd", "root-system-bin", "root-system-common", "root-system",
"rivet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg",
"thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []},
"electrophysiology": {"ignore": [], "suggests":
["science-neuroscience-modeling", "science-dataacquisition", "spike",
"klustakwik", "neurodata", "qrtailab
", "stimfit", "trellis-neuro", "relacs", "chronus", "libbiosig-dev", "nspike",
"rtxi", "bluespike", "meabench", "mclust", "neo", "python-spykeutils",
"python-neo", "pymeg", "libxdffileio-dev", "librtfilter-dev", "libeegdev-dev",
"libmcpanel-dev", "eegview", "aghermann", "eeglab", "python-neuroshare",
"patchclamp", "spykeview"], "depends": ["openelectrophy", "libgdf-dev",
"sigviewer", "libdrawtk-dev"], "recommends": [], "avoid": []}, "simulations":
{"ignore": [], "suggests": ["libopensurgsim-dev", "ceres-solver-doc"],
"depends": ["sumo", "esys-particle", "lammps", "liggghts", "yade",
"python-deap", "openfoam", "getdp", "fdmnes", "radiance", "music-bin",
"calculix-ccx", "python-sfepy", "python-pysph", "python3-woo | python-woo",
"libceres-dev", "gazebo7", "python-escript | python3-escript |
python-escript-mpi | python3-escript-mpi"], "recommends": [], "avoid": []},
"neuroscience-datasets": {"ignore": [], "suggests": [], "depends":
["mni-icbm152-nlin-2009", "mni-colin27-nifti", "haxby2
001-faceobject", "fsl-harvard-oxford-atlases",
"fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas",
"fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas",
"fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas",
"mclaren-rhesus-macaque-atlas", "sri24-atlas"], "recommends": [], "avoid": []},
"viewing-dev": {"ignore": [], "suggests": [], "depends": ["pdl",
"gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib",
"python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev",
"python-gnuplot", "python-gnuplotlib", "libcoin80-dev", "libsoqt4-dev",
"libvtk5-dev", "libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java",
"vtk-examples", "libvtk6-dev", "libvtk6-java", "python-vtk6", "python-pivy",
"libgtkdataboxmm-dev", "libgtkdatabox-dev", "libeinspline-dev", "inventor-dev",
"libqtexengine-dev", "libqwtplot3d-qt4-dev", "python-qwt3d-qt4",
"libchealpix-dev", "python3-skimage", "python3-skimage-lib",
"python3-matplotlib-venn | python-m
atplotlib-venn", "libplplot-dev", "python-plplot-qt", "libglm-dev",
"libglbinding-dev", "libforge-dev", "libgli-dev", "libglobjects-dev",
"libslvs1-dev"], "recommends": [], "avoid": []}, "tools": {"ignore": [],
"suggests": ["libmrmpi-dev", "python-mrjob", "libmemtailor-dev", "python3-pydap
| python-pydap"], "depends": ["openstereogram", "xoscope", "python3-h5py |
python-h5py", "python3-hdf5storage | python-hdf5storage", "science-workflow",
"hdf-compass", "python3-pybind11 | python-pybind11"], "recommends": [],
"avoid": []}, "geography": {"ignore": [], "suggests": ["googleearth-package",
"sumo", "grace6"], "depends": ["gis-workstation", "grass", "qgis",
"qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp",
"gpsd", "gpsdrive", "gpsman", "earth3d", "openscenegraph", "thuban", "drawmap",
"gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "php5-mapscript",
"phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin",
"ogdi-bin", "postgis", "osm2pgsql
", "josm", "josm-plugins", "merkaartor", "gosmore", "python-mapnik",
"mapnik-utils", "osmpbf-bin", "imposm", "hyantesite", "r-cran-sp",
"r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps",
"r-cran-fields", "r-cran-raster", "pgadmin3", "openjump",
"hydroffice.bag-tools", "python3-cartopy | python-cartopy"], "recommends": [],
"avoid": []}, "linguistics": {"ignore": [], "suggests": ["libticcutils2-dev",
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"libitpp-dev", "libtestu01-0-dev", "sollya", "libsollya-dev", "liblrs-dev",
"libqrupdate-dev", "openturns-examples", "cfortran", "givaro-dev-doc",
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"libnglib-dev", "python3-numpy | python-numpy", "python3-numexpr |
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"libblas-dev", "libopenblas-dev", "libsuperlu-dev", "libglpk-dev",
"python-glpk", "libglpk-java", "python-cylp", "libqsopt-ex-dev", "libcgal-dev",
"libqhull-dev", "libmatheval-dev", "python-openopt", "libmatio-dev",
"libblitz0-dev", "libjama-dev", "libtnt-dev", "liblip-dev", "libranlip-dev",
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"libnewmat10-dev", "libmadlib-dev", "libtet1.4-dev", "dolfin-dev",
"python-dolfin", "libslepc3.4.2-dev", "petsc-dev", "libtrilinos-dev",
"python-openturns", "libopenturns-dev", "libqd-dev", "libcqrlib2-dev",
"libcvector2-dev", "libhypre-dev", "libitsol-dev", "libmuparser-dev",
"libsparskit-dev", "libspooles-dev", "libsuitesparse-dev",
"libsuitesparse-metis-dev", "libparmetis-dev", "python-ffc", "python-ufl",
"libscythestat-dev"
, "libfreefem++-dev", "libfreefem-dev", "libgivaro-dev", "fflas-ffpack",
"liblevmar-dev", "libpolybori-dev", "libpolybori-groebner-dev",
"python-polybori", "libquadrule-dev", "libcdd-dev", "libec-dev", "libecm-dev",
"libgf2x-dev", "libiml-dev", "liblfunction-dev", "libfplll-dev",
"liblinbox-dev", "liblrcalc-dev", "libm4ri-dev", "libm4rie-dev",
"libratpoints-dev", "libtachyon-dev", "libzn-poly-dev", "libpynac-dev",
"libsymmetrica2-dev", "libprimesieve6-dev", "gap-dev", "libnfft3-dev",
"libfftw3-dev", "fftw-dev", "sfftw-dev", "liblbfgs-dev", "libdogleg-dev",
"libigraph0-dev", "libalglib-dev", "libeigen3-dev", "libviennacl-dev",
"python3-pyviennacl | python-pyviennacl", "libgnuplot-iostream-dev",
"libqcustomplot-dev", "libcneartree-dev", "libmpfrc++-dev", "libmpfi-dev",
"libscscp1-dev", "python3-linop | python-linop", "libcminpack-dev",
"minpack-dev", "libeinspline-dev", "libdune-grid-dev", "libann-dev",
"libflann-dev", "libdouble-conversion-dev", "libfeel++-dev", "python3-pynfft |
pyt
hon-pynfft", "libug-dev", "python3-pyoperators | python-pyoperators",
"libplb-dev", "libmathicgb-dev", "libfrobby-dev", "libmathic-dev",
"python3-dtcwt | python-dtcwt", "libsopt-dev", "python3-gimmik", "cppad",
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"highenergy-physics-dev": {"ignore": [], "suggests": ["clhep-doc",
"hepmc-examples", "hepmc-user-manual", "hepmc-reference-manual",
"lhapdf-ccwrap-doc", "siscone-examples", "siscone-doc-html", "siscone-doc-pdf",
"fastjet-doc", "fastjet-examples", "pythia8-examples", "pythia8-doc-html",
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"libfastjet-fortran-dev", "libfastjetplugins-dev", "libpythia8-dev",
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ols-dev", "libroot-bindings-python-dev", "libroot-bindings-ruby-dev",
"libroot-graf3d-gl-dev", "libroot-io-xmlparser-dev",
"libroot-math-mathmore-dev", "libroot-math-unuran-dev",
"libroot-misc-memstat-dev", "libroot-misc-table-dev",
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"libroot-graf2d-graf-dev", "libroot-graf2d-postscript-dev",
"libroot-graf3d-eve-dev", "libroot-graf3d-g3d-dev", "libroot-gui-dev",
"libroot-gui-ged-dev", "libroot-hist-dev", "libroot-hist-spectrum-dev",
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"libroot-math-genvector-dev", "libroot-math-mathcore-dev",
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"libroot-misc-minicern-dev", "libroot-montecarlo-eg-dev",
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"libroot-proof-proofplayer-dev", "libroot-tmva-dev", "libroot-tree-dev",
"libroot-tree-treeplayer-dev", "libroot-core-dev", "libroot-static",
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"gap-table-of-marks", "gap-guava", "gap-character-tables", "gap-float",
"gerris", "freefem", "freefem3d", "freefem++", "netgen", "gmsh", "getdp",
"coq", "proofgeneral", "proofgeneral-coq", "matita", "agda", "prover9",
"hol-light", "minisat", "science-statistics", "geomview", "octave", "xmds",
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"scilab-plotlib", "regina-normal", "snappea", "lp-solve", "qsopt-ex",
"libmatheval1", "mumps-test", "nauty", "geogebra", "lrslib", "dolfin-bin",
"fenics", "sfc", "python-ffc", "kseg", "polylib-utils", "rheolef", "scotch",
"isabelle", "bliss", "python-openturns", "qtoctave", "python-deap", "mcl",
"polybori-gui", "polybori", "sagemath", "maxima-sage",
"sagemath-database-conway-polynomials", "sagemath-database-elliptic-curves",
"sagemath-database-graphs", "sagemath-database-mutually-combinatorial-designs",
"sagemath-database-polytopes", "eclib-tools", "gfan", "lcalc", "fplll-tools",
"lrcalc", "palp", "sympow", "tachyon", "4ti2", "normaliz", "surf-alggeo",
"graphviz", "singular", "julia", "qhull-bin", "mathicgb", "frobby",
"geneagrapher", "planarity", "flintqs", "rubiks", "octaviz", "eprover",
"python-minieigen", "coinor-symphony", "tetgen", "feel++-apps", "auto-07p"],
"recommends": ["gap-openmath", "gap-grape"],
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"geda-doc", "kicad-doc-de", "kicad-doc-en", "kicad-doc-es", "kicad-doc-fr",
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"simulpic", "pcb", "oregano", "tkgate", "texlive-latex-extra", "linsmith",
"xsmc-calc", "ngspice", "gspiceui", "easyspice", "gnucap", "qelectrotech",
"covered", "arduino", "arduino-core", "herb", "visolate", "fritzing",
"drawtiming", "geda-gaf", "geda-xgsch2pcb", "gnusim8085", "gtkwave", "gwave",
"qsapecng", "berkeley-abc", "qrouter", "magic", "yosys", "qflow", "graywolf",
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"typesetting": {"ignore": [], "suggests": ["tellico", "openoffice.org-dmaths",
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"jabref", "bibutils", "biber", "feynmf", "texlive", "texlive-science",
"texlive-publishers", "texlive-math-extra", "diploma", "xfig", "transfig",
"dia", "texmaker | kile | lyx | texmacs | auctex | vim-latexsuite | texstudio",
"pandoc", "pandoc-citeproc", "r-c
ran-knitr", "bibus", "mlpost", "latexdiff", "libjlatexmath-java", "cb2bib",
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"libdiet-sed2.8-dev", "libdiet-client2.8-dev", "libdiet-dagda2.8-dev",
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"python-netcdf", "r-cran-rnetcdf", "libnetcdf-java", "libmesh-dev",
"libnfft3-dev", "libnlopt-dev", "libcoin80-dev", "libmetis-edf-dev",
"libslicot-dev", "python-collada", "libann-dev", "libflann-dev", "libdime-dev",
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"neuroscience-modeling": {"ignore": [], "suggests": ["python-pynn", "moose",
"pcsim", "nest", "invt", "xppaut"], "depends": ["python-brian", "cnrun"],
"recommends": [], "avoid": []}, "engineering": {"ignore": [], "suggests":
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"depends": ["librecad", "sailcut", "oce-draw", "python-silo", "libsilo-bin",
"gerris", "gmsh", "getdp", "netgen", "pythoncad", "z88", "freecad",
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"sfc", "cba", "python-fiat", "syrthes", "openfoam", "brlcad", "diet-agent",
"tetgen", "dime", "avl", "cgns-convert", "pycgns", "varkon", "tochnog",
"salome-gui", "salome-jobmanager", "salome-med", "salome-paravis",
"salome-smesh", "salome-yacs", "libadios-bin", "calculix-ccx", "scram",
"python-escript | python3-escript | python-escript-mpi | python3-escript-mpi",
"solvespace"], "recommends": [], "avoid": []}, "physics-dev": {"ignore": [],
"suggests": ["libtriangle-dev"], "depends": ["pyfai", "libnfft3-dev",
"libfftw3-dev", "fftw-dev", "sfftw-dev", "libopenctm-dev", "python-openctm",
"python-quantities", "python3-multipletau | python-multipletau",
"python3-pynfft | python-pynfft", "libfeel++-dev", "python-xrayutilities",
"libplb-dev", "libasl-dev"], "recommends": [], "avoid": []}, "chemistry":
{"ignore": [], "suggests": ["gdpc-examples", "python-mzml-doc"], "depends":
["apbs", "bkchem", "bodr", "libcdk-java", "chemeq", "chemical-mime-data",
"chemtool", "easychem", "gabedit", "galcula
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"chemical-structures", "openfoam", "pyfai", "python-mmtk", "libegad", "libint",
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"recommends": [], "avoid": []}, "dataacquisition-dev": {"ignore": [],
"suggests": [], "depends": ["libnarval1-dev", "libtango-dev",
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"suggests": ["ess", "dynare-matlab", "matlab-support", "science-typesetting",
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"octave", "octave-econometrics", "octave-statistics", "octave-gsl",
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"wxmaxima", "ipython", "python3-matplotlib | python-matplotlib", "python3-numpy
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"python-statsmodels", "python3-pandas | python-pandas", "python3-simpy |
python-simpy", "dolo", "python-econpy", "recs", "python-quantecon",
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"r-other-gecon"], "recommends": [], "avoid": []}, "viewing": {"ignore": [],
"suggests": ["libgrits-dev", "worldwind", "med-imaging", "libgtkmathview-bin",
"jeuclid-mathviewer", "texlive-pictures", "pgplot5", "r-cran-plotrix",
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"r-cran-aplpack", "findimagedupes", "libpuzzle-bin", "python-matplotlib",
"python-scitools", "circos", "circos-tools", "libqglviewer-dev",
"libcoin80-dev", "libsoqt4-dev", "libvtk5-dev"
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"imview", "mayavi2", "g3data", "gwyddion", "paraview", "visit", "gle-graphics",
"gmsh", "lybniz", "3depict", "mathgl", "udav", "matlab2tikz", "cassandra",
"pgfplots", "feedgnuplot", "libgnuplot-iostream-dev", "libqglviewer2",
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"trend", "python-pyqtgraph", "rlplot", "solvespace"], "recommends": [],
"avoid": []}, "devices": {"ignore": [], "suggests": ["libticables-dev",
"libticalcs-dev", "libticonv-dev", "libtifiles-dev"], "depends": ["expeyes",
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"avoid": []}, "nanoscale-physics": {"ignore": [], "suggests": ["hdf5-helpers",
"hdf5-tools", "net
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"science-numericalcomputation", "avogadro", "garlic", "gdis", "ghemical",
"v-sim", "gwyddion", "qtoctave", "scilab", "scilab-sivp", "cbflib-bin",
"python3-lmfit | python-lmfit", "ape", "atompaw", "bigdft", "cp2k", "exciting",
"gpaw", "octopus", "python-ase", "wannier90-1", "wannier90-2", "octaviz",
"fdmnes", "liblevmar-2-6"], "recommends": ["nco", "ncview", "cadabra",
"extrema", "ggobi", "mayavi2", "udav", "gperiodic", "python-elemental",
"graphviz", "libblacs-mpi1", "libscalapack
-mpi1", "python-scientific", "python-scipy", "python-scitools",
"python-sympy", "pyxplot"], "avoid": []}, "imageanalysis-dev": {"ignore": [],
"suggests": ["libfreeimage-dev"], "depends": ["libcv-dev", "cimg-dev",
"libsimage-dev", "libvlfeat-dev", "libvisad-java", "libvigraimpex-dev",
"python-vigra", "python3-imageio | python-imageio", "liblimereg-dev"],
"recommends": [], "avoid": []}, "logic": {"ignore": [], "suggests": [],
"depends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral",
"why", "why3", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3",
"z3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "minisat+", "clasp",
"coala", "gringo", "lbt", "maria", "mona"], "recommends": [], "avoid": []},
"psychophysics": {"ignore": [], "suggests": ["science-neuroscience-cognitive",
"science-bci", "visionegg", "python-pyxid", "tscope", "opensesame",
"psytoolkit", "debruijn", "psychlops", "pebl"], "depends": ["psychopy",
"python-pyoptical", "python-pyepl", "libfr
eenect-dev", "nrec"], "recommends": ["octave-psychtoolbox-3"], "avoid": []},
"distributedcomputing": {"ignore": [], "suggests": ["hpcc",
"coop-computing-tools", "python-mpi4py", "psom", "octave-mpi"], "depends":
["ipython", "torque-common", "torque-server", "nordugrid-arc-nox",
"gridengine-client", "gridengine-exec", "gridengine-master", "gridengine-qmon",
"globus-core", "openmpi-bin", "mpich", "openmpipython", "mpich2python",
"python-mpi", "htcondor", "dmtcp", "environment-modules", "python-scoop"],
"recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests":
["paw-demos", "science-statistics", "science-mathematics", "scilab-sivp",
"openctm-tools", "feel++-apps"], "depends": ["cernlib", "geant321", "paw++",
"paw", "gpaw", "clhep", "geant4", "abinit | mpqc | openmx | psi3", "gerris",
"feynmf", "openfoam", "fityk", "horae", "ifeffit", "sixpack", "tessa |
tessa-mpi", "science-numericalcomputation", "oce-draw", "science-electronics",
"v-sim", "gpiv", "gpivtools", "maxima", "py
thon-sympy", "axiom", "meshlab", "cadabra", "drawxtl", "opticalraytracer",
"ghkl", "python-deap", "etsf-io", "pymca", "quantum-espresso", "gwyddion",
"blzpack", "gate", "openfoam", "jfreemesh", "spis", "espresso++", "cp2k",
"octaviz", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev",
"libroot-math-mlp-dev", "fdmnes", "pyfr"], "recommends": [], "avoid": []},
"meteorology-dev": {"ignore": [], "suggests": ["udunits-bin", "libcblas-dev",
"gfortran", "ksh", "pkg-config", "openturns-examples", "libfeel++-dev",
"python3-coards | python-coards"], "depends": ["libemos-dev",
"mpi-defaults-dev", "libcoarrays-dev", "libcoarrays-bin", "libgadap-dev",
"libcmor-dev", "libcdi-dev", "libeccodes-dev", "libeccodes-tools",
"libgrib2c-dev", "libhe5-hdfeos-dev", "libhdfeos-dev", "libproj-dev",
"libgctp-dev", "libnetcdf-dev", "netcdf-bin", "r-cran-rnetcdf",
"liblapack-dev", "libblas-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev",
"libblas-doc", "liblapack-doc", "libfftw3-doc", "liblas-dev",
"libsphere-dev", "libterralib-dev", "libmagics++-dev", "libaec-dev",
"liboasis3-dev", "libudunits2-dev", "libdap-dev", "python-openturns",
"libopenturns-dev", "wcslib-dev", "wcslib-doc", "librsl-dev",
"libwreport-dev"], "recommends": [], "avoid": []}, "social": {"ignore": [],
"suggests": [], "depends": ["opensesame"], "recommends": [], "avoid": []}}
\ No newline at end of file
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