The following commit has been merged in the master branch:
commit f77b499723bc7ee0ab87fa9edcfac05a97eb6ece
Author: Andreas Tille <[email protected]>
Date: Mon Nov 13 20:17:47 2017 +0100
Remove edger from explicit mentioning since we can not guarantee thet the
package is up to date. Last versions are needing locfit which is not
distributable.
diff --git a/tasks/bio b/tasks/bio
index d0f8bce..10508ae 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -860,7 +860,7 @@ Recommends: r-bioc-metagenomeseq, r-bioc-phyloseq
Recommends: r-bioc-ebseq
-Recommends: r-bioc-limma, r-bioc-edger
+Recommends: r-bioc-limma
Suggests: r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-ensembldb,
r-bioc-go.db
diff --git a/tasks/bio-ngs b/tasks/bio-ngs
index 8003d82..dbd0652 100644
--- a/tasks/bio-ngs
+++ b/tasks/bio-ngs
@@ -15,7 +15,6 @@ Recommends:
last-align,
maq,
picard-tools,
- r-bioc-edger,
r-bioc-hilbertvis,
rna-star,
samtools,
diff --git a/tasks/cloud b/tasks/cloud
index 6fbb755..807fbc2 100644
--- a/tasks/cloud
+++ b/tasks/cloud
@@ -78,5 +78,5 @@ X-End-Category: Tools for the molecular biologist.
X-Begin-Category: Others
Recommends: \
aevol, biomaj, bioperl, bioperl-run, cain, clonalframe, circos,
datamash, filo,
- prodigal, python-biopython, python3-biopython, qiime, r-bioc-edger,
+ prodigal, python-biopython, python3-biopython, qiime,
r-cran-pvclust, r-cran-vegan
diff --git a/tasks/statistics b/tasks/statistics
index d665704..4a9b388 100644
--- a/tasks/statistics
+++ b/tasks/statistics
@@ -4,7 +4,7 @@ Description: Debian Med statistics
This metapackage will install packages which are helpful to do statistics
with a special focus on tasks in medical care.
-Recommends: r-bioc-edger, r-bioc-limma
+Recommends: r-bioc-limma
Why: Statistical analysis of transcriptome expression assays.
Recommends: r-bioc-qvalue
--
Debian Med metapackages
_______________________________________________
Blends-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/blends-commit
