The following commit has been merged in the master branch:
commit 1385b2497bfd8f228d71b644f3d6a31d0c3b154a
Author: Andreas Tille <[email protected]>
Date: Fri Dec 1 17:02:24 2017 +0100
Inject compclust into Git
diff --git a/tasks/bio b/tasks/bio
index 9917929..14421d0 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -2575,26 +2575,8 @@ Pkg-Description: heuristic computer program to identify
prophage regions within
a level of microbial genome annotation that was previously void.
Recommends: compclust
-Homepage: http://woldlab.caltech.edu/compclust/
-License: MLX (http://woldlab.caltech.edu/compclust/LICENSE.txt)
-Language: Python
X-Category: Genomics; Clustering analysis (+GUI)
Pkg-URL: http://woldlab.caltech.edu/compclust/debian_install.shtml
-Pkg-Description: explore and quantify relationships between clustering results
- CompClust is a python package written using the pyMLX and IPlot APIs. It
provides
- software tools to explore and quantify relationships between clustering
results. Its
- development has been largely built around needs of microarray data analysis
but could
- be easily used in other domains.
- .
- Briefly pyMLX provides for efficient and convenient execution of many
clustering
- algorithms using a extendable library of algorithms. It also provides
many-to-many
- linkages between data features and annotations (such as cluster labels, gene
names,
- gene ontology information, etc.) These linkages persist through varied data
- manipulations. IPlot provides an abstraction of the plotting process in which
any
- arbitrary feature or derived feature of the data can be projected onto any
feature
- of the plot, including the X,Y coordinates of points, marker symbol, marker
size,
- maker/line color, etc. These plots are intrinsically linked to the dataset,
the
- View and the Labeling classes found within pyMLX.
Recommends: treebuilder3d
Homepage: http://www.bcgsc.ca/platform/bioinfo/software/treebuilder
--
Debian Med metapackages
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