The following commit has been merged in the historic branch: commit 6c0b338c229d6163381015383ea1a8ab646c33e2 Author: Andreas Tille <ti...@debian.org> Date: Wed Feb 21 14:36:11 2018 +0100
Commit status of 0.8.9 diff --git a/VERSION b/VERSION index ee94dd8..55485e1 100644 --- a/VERSION +++ b/VERSION @@ -1 +1 @@ -0.8.3 +0.8.9 diff --git a/common/control b/common/control index e7ee8b3..ae08a83 100644 --- a/common/control +++ b/common/control @@ -1,6 +1,6 @@ Package: med-common Architecture: all -Depends: adduser, debconf (>= 1.2), menu, cdd-common (>= 0.3.2) +Depends: adduser, debconf (>= 1.2), menu, cdd-common (>= 0.3.3) Description: Debian-Med Project common package This package builds the basic infra structure of all med-* packages. . diff --git a/debian/changelog b/debian/changelog index 95f3f6a..7100a02 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +debian-med (0.8.9) experimental; urgency=low + + * New upstream version which now uses the features of cdd-dev 0.3.9 + * Exclude .svn dirs in dist target of debian/rules + + -- Andreas Tille <ti...@debian.org> Fri, 16 Jul 2004 11:33:21 +0200 + debian-med (0.8.3) unstable; urgency=high * Rebuilded again against cdd-dev 0.3.4 which really closes the diff --git a/debian/control b/debian/control index 9a567be..6faaf9f 100644 --- a/debian/control +++ b/debian/control @@ -2,12 +2,12 @@ Source: debian-med Section: misc Priority: extra Maintainer: Andreas Tille <ti...@debian.org> -Build-Depends-Indep: debhelper (>= 4), cdd-dev (>= 0.3.4) +Build-Depends-Indep: debhelper (>= 4), cdd-dev (>= 0.3.9) Standards-Version: 3.6.1 Package: med-common Architecture: all -Depends: adduser, ${misc:Depends}, menu, cdd-common (>= 0.3.2) +Depends: adduser, ${misc:Depends}, menu (>= 2.1.14), cdd-common (>= 0.3.9) Description: Debian-Med Project common package This package builds the basic infra structure of all med-* packages. . @@ -18,7 +18,7 @@ Description: Debian-Med Project common package Package: med-bio Architecture: all -Depends: blast2, boxshade, bugsx, fastdnaml, fastlink, garlic, ghemical, hmmer, loki, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot, pymol, r-cran-qtl, rasmol, readseq, tigr-glimmer, tree-puzzle, med-common (>= ${binary:Version}) +Depends: med-common (= ${binary:Version}), blast2, boxshade, bugsx, fastdnaml, fastlink, garlic, ghemical, hmmer, loki, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot, pymol, r-cran-qtl, rasmol, readseq, tigr-glimmer, tree-puzzle Suggests: clustalw, clustalw-mpi, clustalx, molphy, phylip, seaview, treetool Description: Debian-Med micro-biology packages This meta package will install micro-biology related Debian packages @@ -26,30 +26,29 @@ Description: Debian-Med micro-biology packages Package: med-bio-dev Architecture: all -Depends: bioperl, libncbi6-dev, libvibrant6-dev, mcl, med-common (>= ${binary:Version}) -Suggests: biomode, r-base-core +Depends: med-common (= ${binary:Version}), bioperl, libncbi6-dev, libvibrant6-dev, mcl +Suggests: biomode, r-base Description: Debian-Med packages for development of micro-biology applications This meta package will install Debian packages which might be helpful for development of applications for micro-biological research. Package: med-cms Architecture: all -Depends: zope-zms, med-common (>= ${binary:Version}) +Depends: med-common (= ${binary:Version}), zope-zms Description: Debian-Med content management systems This meta package will install packages which are useful to build a content management system for medical care. Package: med-dent Architecture: all -Depends: mozilla-browser, med-common (>= ${binary:Version}) -Suggests: debconf (>= 1.2), debianutils (>= 2.6.2), www-browser +Depends: med-common (= ${binary:Version}), debconf (>= 1.2), debianutils (>= 2.6.2), mozilla-browser | www-browser Description: Debian-Med package for dental practice client This meta package will configure your system to act as client for the OdontoLinux server which provides a system for managing a dental practice. Package: med-imaging Architecture: all -Depends: ctn, ctsim, medcon, minc-tools, paul, xmedcon, med-common (>= ${binary:Version}) +Depends: med-common (= ${binary:Version}), ctn, ctsim, medcon, minc-tools, paul, xmedcon Suggests: imagemagick Description: Debian-Med imaging packages This meta package will install Debian packages which might be useful in medical @@ -57,14 +56,14 @@ Description: Debian-Med imaging packages Package: med-imaging-dev Architecture: all -Depends: ctn-dev, libgtkimreg-dev, libmdc2-dev, libminc0-dev, med-common (>= ${binary:Version}) +Depends: med-common (= ${binary:Version}), ctn-dev, libgtkimreg-dev, libmdc2-dev, libminc0-dev Description: Debian-Med packages for medical image development - This meta package will install Debian packages which might be useful + This meta package will install Debian packages which might be useful for developing applications for medical image processing. Package: med-pharmacy Architecture: all -Depends: chemtool, med-common (>= ${binary:Version}) +Depends: med-common (= ${binary:Version}), chemtool Description: Debian-Med packages for pharmaceutical research This meta package contains dependencies for a collection of software and documentation which is useful for @@ -72,9 +71,9 @@ Description: Debian-Med packages for pharmaceutical research Package: med-physics Architecture: all -Depends: octave, paw++, r-base, med-common (>= ${binary:Version}) -Recommends: paw +Depends: med-common (= ${binary:Version}), octave, paw++, r-base Suggests: paw-demos +Recommends: paw Description: Debian-Med packages for medical physicists This meta package contains dependencies for a collection of software and documentation which is useful for @@ -83,7 +82,7 @@ Description: Debian-Med packages for medical physicists Package: med-tools Architecture: all -Depends: mencal, med-common (>= ${binary:Version}) +Depends: med-common (= ${binary:Version}), mencal Description: Debian-Med several tools This meta package will install tools for several purposes in health care. Currently it just depends from mencal. diff --git a/debian/control.stub b/debian/control.stub index 1ee54b3..dca7381 100644 --- a/debian/control.stub +++ b/debian/control.stub @@ -2,7 +2,7 @@ Source: debian-med Section: misc Priority: extra Maintainer: Andreas Tille <ti...@debian.org> -Build-Depends-Indep: debhelper (>= 4), cdd-dev (>= 0.3.4) +Build-Depends-Indep: debhelper (>= 4), cdd-dev (>= 0.3.9) Standards-Version: 3.6.1 Package: med diff --git a/debian/med-dent.config b/debian/med-dent.config new file mode 100755 index 0000000..8f1843b --- /dev/null +++ b/debian/med-dent.config @@ -0,0 +1,20 @@ +#!/bin/sh +set -e + +CFGDIR=/etc/cdd/med/tasks/dent/ +CFG=${CFGDIR}/odontolinux.conf +PKG=`basename $0 | sed -e 's/\.[^.]*$//'` + +DEBCONF_DEBUG=developer + +. /usr/share/debconf/confmodule +db_version 2.0 + +if [ -e ${CFG} ]; then + . ${CFG} || true + if [ "$SERVER" ] ; then + db_set ${PKG}/server $SERVER + fi +fi +db_input medium ${PKG}/server || true +db_go || true diff --git a/debian/med-dent.install b/debian/med-dent.install new file mode 100644 index 0000000..fa3372b --- /dev/null +++ b/debian/med-dent.install @@ -0,0 +1 @@ +install/dent/dentalpractice usr/bin diff --git a/debian/med-dent.manpages b/debian/med-dent.manpages new file mode 100644 index 0000000..3794a60 --- /dev/null +++ b/debian/med-dent.manpages @@ -0,0 +1 @@ +install/dent/dentalpractice.1 diff --git a/debian/med-dent.postinst.stub b/debian/med-dent.postinst.stub new file mode 100644 index 0000000..5495f68 --- /dev/null +++ b/debian/med-dent.postinst.stub @@ -0,0 +1,32 @@ +#!/bin/sh +set -e + +CFGDIR=/etc/cdd/med/tasks/dent/ +CFG=${CFGDIR}/odontolinux.conf +PKG=`basename $0 | sed -e 's/\.[^.]*$//'` + +DEBCONF_DEBUG=developer +. /usr/share/debconf/confmodule +db_version 2.0 + +NEW=0 +if [ -e "${CONF}" ]; then + NEW=-1 + . ${CFG} || true +fi + +# Handle server variable in config file +db_get ${PKG}/server +if [ ${NEW} ] ; then + mkdir -p ${CFGDIR} + cat > ${CFG} <<EOT +# Configuration for Odontolinux +# SERVER is the host which is running the Odontolinux system. +# The default host is localhost. +SERVER=$RET +EOT +fi + +db_go + +#DEBHELPER# diff --git a/debian/med-dent.templates b/debian/med-dent.templates new file mode 100644 index 0000000..c91b024 --- /dev/null +++ b/debian/med-dent.templates @@ -0,0 +1,8 @@ +Template: med-dent/server +Type: string +Default: localhost +_Description: On which host is the Odontolinux! server running? + Odontolinux is a dental office management software which runs on a + server and will be accessed by a web browser. Please input the + host name on which the Odontolinux server is running. If Odontolinux + is running on this host you can go with the defaul (localhost). diff --git a/debian/med-templates b/debian/med-templates deleted file mode 100644 index b2bdb66..0000000 --- a/debian/med-templates +++ /dev/null @@ -1,6 +0,0 @@ -Template: med-common/group -Type: multiselect -_Choices: ${users} -_Description: Please specify the Debian-Med users! - Here is a list of all normal users of the system. Now you can select - those users who should get a Debian-Med user menu. diff --git a/debian/po.stub/POTFILES.in b/debian/po.stub/POTFILES.in new file mode 100644 index 0000000..657e4d2 --- /dev/null +++ b/debian/po.stub/POTFILES.in @@ -0,0 +1 @@ +[type: gettext/rfc822deb] med-dent.templates diff --git a/debian/po.stub/de.po b/debian/po.stub/de.po new file mode 100644 index 0000000..1a6922c --- /dev/null +++ b/debian/po.stub/de.po @@ -0,0 +1,46 @@ +# +# Translators, if you are not familiar with the PO format, gettext +# documentation is worth reading, especially sections dedicated to +# this format, e.g. by running: +# info -n '(gettext)PO Files' +# info -n '(gettext)Header Entry' +# +# Some information specific to po-debconf are available at +# /usr/share/doc/po-debconf/README-trans +# or http://www.debian.org/intl/l10n/po-debconf/README-trans +# +# Developers do not need to manually edit POT or PO files. +# +#, fuzzy +msgid "" +msgstr "" +"Project-Id-Version: debian-med\n" +"Report-Msgid-Bugs-To: Andreas Tille <ti...@debian.org>\n" +"POT-Creation-Date: 2004-07-09 17:42+0200\n" +"PO-Revision-Date: 2004-07-09 17:42+0200\n" +"Last-Translator: Andreas Tille <ti...@debian.org>\n" +"Language-Team: German <debian-l10n-fre...@lists.debian.org>\n" +"MIME-Version: 1.0\n" +"Content-Type: text/plain; charset=CHARSET\n" +"Content-Transfer-Encoding: 8bit\n" + +#. Type: string +#. Description +#: ../med-dent.templates:4 +msgid "On which host is the Odontolinux! server running?" +msgstr "Auf welchem Rechner l�uft der Odontolinux! server?" + +#. Type: string +#. Description +#: ../med-dent.templates:4 +msgid "" +"Odontolinux is a dental office management software which runs on a server " +"and will be accessed by a web browser. Please input the host name on which " +"the Odontolinux server is running. If Odontolinux is running on this host " +"you can go with the defaul (localhost)." +msgstr "" +"Odontolinux ist ein Verwaltungssystem f�r die zahn�rztliche Praxis, das " +"auf einem Server l�uft und �ber einen Web-Browser bedient wird. Bitte " +"geben Sie den Rechnernamen ein, auf dem der Odontolinux server l�uft. " +"Falls Odontolinux auf diesem Server l�uft, kann der Standardwert " +"(localhost) beibehalten werden." diff --git a/debian/po.stub/templates.pot b/debian/po.stub/templates.pot new file mode 100644 index 0000000..c9c6d30 --- /dev/null +++ b/debian/po.stub/templates.pot @@ -0,0 +1,41 @@ +# +# Translators, if you are not familiar with the PO format, gettext +# documentation is worth reading, especially sections dedicated to +# this format, e.g. by running: +# info -n '(gettext)PO Files' +# info -n '(gettext)Header Entry' +# +# Some information specific to po-debconf are available at +# /usr/share/doc/po-debconf/README-trans +# or http://www.debian.org/intl/l10n/po-debconf/README-trans +# +# Developers do not need to manually edit POT or PO files. +# +#, fuzzy +msgid "" +msgstr "" +"Project-Id-Version: PACKAGE VERSION\n" +"Report-Msgid-Bugs-To: \n" +"POT-Creation-Date: 2004-07-09 17:42+0200\n" +"PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" +"Last-Translator: FULL NAME <EMAIL@ADDRESS>\n" +"Language-Team: LANGUAGE <l...@li.org>\n" +"MIME-Version: 1.0\n" +"Content-Type: text/plain; charset=CHARSET\n" +"Content-Transfer-Encoding: 8bit\n" + +#. Type: string +#. Description +#: ../med-dent.templates:4 +msgid "On which host is the Odontolinux! server running?" +msgstr "" + +#. Type: string +#. Description +#: ../med-dent.templates:4 +msgid "" +"Odontolinux is a dental office management software which runs on a server " +"and will be accessed by a web browser. Please input the host name on which " +"the Odontolinux server is running. If Odontolinux is running on this host " +"you can go with the defaul (localhost)." +msgstr "" diff --git a/debian/rules b/debian/rules index f6cd24d..7e8664b 100755 --- a/debian/rules +++ b/debian/rules @@ -8,46 +8,29 @@ cdd=med pkgsrc=debian-$(cdd) -control: gen-control debian/control.stub tasks/* control-stamp -control-stamp: - rm -f debian/control - cdd-gen-control -c -m -i - - touch control-stamp -build: control-stamp build-stamp +build: build-stamp build-stamp: - # Fix *.dsc file to mention all binary targets - TASKS="" ; \ - if [ -d common ] ; then TASKS="$(cdd)-common" ; fi ; \ - for task in `ls -1 tasks | sort` ; do \ - if [ "$${TASKS}" != "" ] ; then TASKS="$${TASKS}, " ; fi ; \ - TASKS="$${TASKS}$(cdd)-$${task}" ; \ - done ; \ - sed "s/^\(Binary: \)$(cdd)/\1$${TASKS}/" ../$(pkgsrc)_*.dsc > tmp.dsc ; \ - mv tmp.dsc ../$(pkgsrc)_*.dsc dh_testdir #/usr/bin/docbook-to-man debian/meta-$(cdd).sgml > meta-$(cdd).1 touch build-stamp -clean: debian/control +clean: debian/control tasks/* debian/control.stub dh_testdir dh_testroot - rm -f build-stamp control-stamp - rm -rf tmp - rm -f tasks/*~ - [ -d menu ] && rm -f debian/$(cdd)-*.post{inst,rm} - rm -f debian/$(cdd)-common.{templates,config,install} debian/90$(cdd)-common - rm -rf debian/po + rm -f build-stamp + + cdd-clean-helper if [ -f debian/control ] ; then dh_clean ; fi rm -f debian/control - ln -s control.stub debian/control + # ln -s control.stub debian/control + cdd-gen-control -c -m -i -install: control-stamp build +install: build dh_testdir dh_testroot dh_clean -k @@ -93,7 +76,8 @@ dist: rm -rf $${distdir} ; \ mkdir $${distdir} ; \ chmod 777 $${distdir} ; \ - rsync -a --exclude $${distdir} --exclude CVS * $${distdir} ; \ + rsync -a --exclude $${distdir} --exclude CVS --exclude .svn * $${distdir} ; \ + ln -s control.stub $${distdir}/debian/control ; \ GZIP=-9 tar -czf ../$(pkgsrc)_`cat VERSION`.tar.gz $${distdir} ; \ rm -rf $${distdir} diff --git a/debian/templates b/debian/templates deleted file mode 100644 index b2bdb66..0000000 --- a/debian/templates +++ /dev/null @@ -1,6 +0,0 @@ -Template: med-common/group -Type: multiselect -_Choices: ${users} -_Description: Please specify the Debian-Med users! - Here is a list of all normal users of the system. Now you can select - those users who should get a Debian-Med user menu. diff --git a/docs/bio/#biomode.txt b/docs/bio/#biomode.txt deleted file mode 100644 index b0dd5cd..0000000 --- a/docs/bio/#biomode.txt +++ /dev/null @@ -1,11 +0,0 @@ -BioMode: Emacs mode to edit genetic data - -Some information about Biomode from the Debian-Med project. - - It provides you several interesting commands to take the antiparallel - of a region, convert it using readseq, runs blast on it, etc. - -This package is not really installed by the med-bio package but it is -suggested. That means if you are comfortable with the powerful editor -Emacs you might wish to install also the biomode package and make use -of it by typing "M-x biomode". diff --git a/docs/bio/bioperl.txt b/docs/bio/bioperl.txt deleted file mode 100644 index ecf4efb..0000000 --- a/docs/bio/bioperl.txt +++ /dev/null @@ -1,13 +0,0 @@ -Bioperl: Perl tools for computational molecular biology - -Some information about Bioperl from the Debian-Med project. - - The Bioperl project is a coordinated effort to collect computational methods - routinely used in bioinformatics into a set of standard CPAN-style, - well-documented, and freely available Perl modules. - -The Homepage is http://bio.perl.org/ - -You can get a good overview by the main manpage: - - man bioperl diff --git a/docs/bio/blast2.txt b/docs/bio/blast2.txt deleted file mode 100644 index 4b2d43f..0000000 --- a/docs/bio/blast2.txt +++ /dev/null @@ -1,19 +0,0 @@ -Blast2: Basic Local Alignment Search Tool - -Some information about Blast2 from the Debian-Med project. - - The famous sequence alignment program. This is "official" NCBI version, #2. - The blastall executable allows you to give a nucleotide or protein - sequence to the program. It is compared against databases and a summary of - matches is returned to the user. - - The reference Web server is http://www.ncbi.nlm.nih.gov/BLAST/. There you - can obtain information about the databases to use which are not included - in Debian and how they can be retrieved manually. - - More infromation about the blast2 tools can be obtained from the following - manpages: - - copymat.1 formatdb.1 makemat.1 blast.1 blastclust.1 fastacmd.1 seedtop.1 - impala.1 bl2seq.1 blastpgp.1 blastcl3.1 blastall.1 rpsblast.1 megablast.1 - diff --git a/docs/bio/ncbi-tools-bin.txt b/docs/bio/ncbi-tools-bin.txt deleted file mode 100644 index 425e6cf..0000000 --- a/docs/bio/ncbi-tools-bin.txt +++ /dev/null @@ -1,13 +0,0 @@ -NCBI-Tools-bin: NCBI libraries for biology applications (text-based utilities) - -Some information about NCBI-Tools-Bin from the Debian-Med project. - - This package includes various utilities distributed with the NCBI C SDK. - None of the programs in this package require X; you can find the X-based - utilities in the ncbi-tools-x11 package. BLAST and related tools are - in a separate package (blast2). - - The reference Web server is http://www.ncbi.nlm.nih.gov/BLAST/. - - You can easily use the programs contained in the ncbi-tools-bin package - via the menu under Debian/Apps/Technical. diff --git a/docs/bio/ncbi-tools-x11.txt b/docs/bio/ncbi-tools-x11.txt deleted file mode 100644 index 4a0b70d..0000000 --- a/docs/bio/ncbi-tools-x11.txt +++ /dev/null @@ -1,13 +0,0 @@ -NCBI-Tools-X11: NCBI libraries for biology applications (X-based utilities) - -Some information about NCBI-Tools-X11 from the Debian-Med project. - - This package includes some X-based utilities distributed with the - NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These - programs are not part of ncbi-tools-bin because they depend on - several additional library packages. - - The reference Web server is http://www.ncbi.nlm.nih.gov/BLAST/. - - You can easily use the programs contained in the ncbi-tools-x11 package - via the menu under Debian/Apps/Technical. diff --git a/install/dent/dentalpractice b/install/dent/dentalpractice new file mode 100755 index 0000000..789f922 --- /dev/null +++ b/install/dent/dentalpractice @@ -0,0 +1,19 @@ +#!/bin/sh +CFGDIR=/etc/cdd/med/tasks/dent/ +CFG=${CFGDIR}/odontolinux.conf + +if [ ! -d "$CFGDIR" ] ; then + echo "Config directory "$CFGDIR" is missing." + exit -1 +fi + +if [ ! -e "$CFG" ] ; then + echo "Config file "$CFG" is missing." + exit -1 +fi + +. $CFG + +URL=http://"${SERVER:-localhost}"/odontolinux/index.php + +sensible-browser "$URL" diff --git a/install/dent/dentalpractice.1 b/install/dent/dentalpractice.1 new file mode 100644 index 0000000..0b90b0b --- /dev/null +++ b/install/dent/dentalpractice.1 @@ -0,0 +1,14 @@ +.TH dentalpractice 1 "May 24, 2002" "Debian-Med" +.SH NAME +.B dentalpractice +\- call web browser pointing to Odontolinux! server + +.SH SYNOPSIS +.B dentalpractice + +.SH DESCRIPTION +Call the prefered browser and point the user directly to the configured +server of the Odontolinux! dental practice management system. + +.SH AUTHOR +Andreas Tille <ti...@debian.org>. diff --git a/menu/bio b/menu/bio deleted file mode 100644 index ff200e9..0000000 --- a/menu/bio +++ /dev/null @@ -1,19 +0,0 @@ -?package(med-bio):needs="text" section="Med/Microbiology"\ - title="Boxshade" command="/usr/bin/boxshade" -?package(med-bio):needs="X11" section="Med/Microbiology"\ - title="Bugsx" command="/usr/bin/bugsx -g +0+0" hints="Evolve Biomorphs" -?package(med-bio):needs="X11" section="Med/Microbiology"\ - title="Garlic" command="/usr/bin/garlic" hints="Molecular Visualization" -?package(med-bio):needs="X11" section="Med/Microbiology"\ - title="ghemical" command="/usr/bin/ghemical" -?package(med-bio):needs="X11" section="Med/Microbiology"\ - title="NjPlot" command="/usr/bin/njplot" hints="Tree Drawing" -?package(med-bio):needs="x11" section="Med/Microbiology" \ - title="PyMOL" command="/usr/bin/pymol" \ - hints="PyMOL Molecular Graphics System" -?package(med-bio):needs="x11" section="Med/Microbiology" \ - title="rasmol" command="/usr/bin/rasmol" \ - hints="Molecule visualization and rendering" -?package(med-bio):needs="text" section="Med/Microbiology"\ - title="Tree-Puzzle" command="/usr/bin/tree-puzzle"\ - hints="Reconstruction of Phylogenetic Trees" diff --git a/menu/bio-dev b/menu/bio-dev deleted file mode 100644 index 72f2f92..0000000 --- a/menu/bio-dev +++ /dev/null @@ -1,4 +0,0 @@ -?package(med-bio-dev):command="/usr/bin/vibrate /usr/bin/asntool" needs="X11" \ - section="Med/Microbiology Development" title="asntool" hints="Biology" icon="/usr/share/pixmaps/asntool.xpm" -?package(med-bio-dev):command="/usr/bin/vibrate /usr/bin/errhdr" needs="X11" \ - section="Med/Microbiology Development" title="errhdr" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" diff --git a/docs/bio-dev/#biomode.txt b/menu/bio-dev/biomode.txt similarity index 100% rename from docs/bio-dev/#biomode.txt rename to menu/bio-dev/biomode.txt diff --git a/docs/bio-dev/bioperl.txt b/menu/bio-dev/bioperl.txt similarity index 100% rename from docs/bio-dev/bioperl.txt rename to menu/bio-dev/bioperl.txt diff --git a/menu/bio-dev/libncbi6-dev.menu b/menu/bio-dev/libncbi6-dev.menu new file mode 100644 index 0000000..103e4d9 --- /dev/null +++ b/menu/bio-dev/libncbi6-dev.menu @@ -0,0 +1,4 @@ +?package(libncbi6-dev):command="/usr/bin/vibrate /usr/bin/asntool" needs="X11" \ + section="Med/Biology development" title="asntool" hints="Biology" icon="/usr/share/pixmaps/asntool.xpm" +?package(libncbi6-dev):command="/usr/bin/vibrate /usr/bin/errhdr" needs="X11" \ + section="Med/Biology development" title="errhdr" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" diff --git a/docs/bio-dev/libvibrant6-dev.txt b/menu/bio-dev/libvibrant6-dev.txt similarity index 100% rename from docs/bio-dev/libvibrant6-dev.txt rename to menu/bio-dev/libvibrant6-dev.txt diff --git a/docs/bio-dev/mcl.txt b/menu/bio-dev/mcl.txt similarity index 100% rename from docs/bio-dev/mcl.txt rename to menu/bio-dev/mcl.txt diff --git a/menu/bio/blast2.menu b/menu/bio/blast2.menu new file mode 100644 index 0000000..95384c4 --- /dev/null +++ b/menu/bio/blast2.menu @@ -0,0 +1,29 @@ +# The lot of entries just blast the menu to much +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/bl2seq" needs="X11" \ + section="Med/Biology/Blast2" title="bl2seq" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/blast2" needs="X11" \ + section="Med/Biology/Blast2" title="blast2" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/blastall" needs="X11" \ + section="Med/Biology/Blast2" title="blastall" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/blastcl3" needs="X11" \ + section="Med/Biology/Blast2" title="blastcl3" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/blastclust" needs="X11" \ + section="Med/Biology/Blast2" title="blastclust" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/blastpgp" needs="X11" \ + section="Med/Biology/Blast2" title="blastpgp" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/copymat" needs="X11" \ + section="Med/Biology/Blast2" title="copymat" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/fastacmd" needs="X11" \ + section="Med/Biology/Blast2" title="fastacmd" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/formatdb" needs="X11" \ + section="Med/Biology/Blast2" title="formatdb" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/impala" needs="X11" \ + section="Med/Biology/Blast2" title="impala" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/makemat" needs="X11" \ + section="Med/Biology/Blast2" title="makemat" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/megablast" needs="X11" \ + section="Med/Biology/Blast2" title="megablast" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/rpsblast" needs="X11" \ + section="Med/Biology/Blast2" title="rpsblast" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/seedtop" needs="X11" \ + section="Med/Biology/Blast2" title="seedtop" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" diff --git a/docs/bio/fastdnaml.txt b/menu/bio/fastdnaml.html similarity index 59% rename from docs/bio/fastdnaml.txt rename to menu/bio/fastdnaml.html index 76d1d1c..3995434 100644 --- a/docs/bio/fastdnaml.txt +++ b/menu/bio/fastdnaml.html @@ -1,9 +1,16 @@ -FastDNAml: Construction of Phylogenetic Trees +<html> +<head> +<title>Construction of Phylogenetic Trees</title> +<meta name="author" content="Andreas Tille" /> +</head> +<body> +<h2>FastDNAml: Construction of Phylogenetic Trees</h2> -Some information about fastDNAml from the Debian-Med project. +<h3>Some information about fastDNAml from the Debian-Med project.</h3> - fastdnaml provides tools for construction of phylogenetic trees of DNA sequences +<h4>fastdnaml provides tools for construction of phylogenetic trees of DNA sequences</h4> +<quote> fastDNAml is a program derived from Joseph Felsenstein's version 3.3 DNAML (part of his PHYLIP package). Users should consult the documentation for DNAML before using this program. @@ -11,17 +18,27 @@ Some information about fastDNAml from the Debian-Med project. faster and using less memory, so that larger trees and/or more bootstrap replicates become tractable. Much of fastDNAml is merely a recoding of the PHYLIP 3.3 DNAML program from PASCAL to C. +</quote> - For more detailed information see +<h4>For more detailed information see</h4> +<example> man fastDNAml man fastDNAml-util view /usr/share/doc/fastdnaml/fastDNAml_doc_1.2.txt.gz +</example> or test the examples under +<example> /usr/share/doc/fastdnaml/examples +</example> using the Makefile provided under +<example> /usr/share/doc/fastdnaml/examples/tests +</example> +</body> +</html> + diff --git a/docs/bio/fastlink.txt b/menu/bio/fastlink.txt similarity index 100% rename from docs/bio/fastlink.txt rename to menu/bio/fastlink.txt diff --git a/docs/bio/glimmer.txt b/menu/bio/glimmer.txt similarity index 100% rename from docs/bio/glimmer.txt rename to menu/bio/glimmer.txt diff --git a/docs/bio/hmmer.txt b/menu/bio/hmmer.txt similarity index 100% rename from docs/bio/hmmer.txt rename to menu/bio/hmmer.txt diff --git a/docs/bio/loki.txt b/menu/bio/loki.txt similarity index 100% rename from docs/bio/loki.txt rename to menu/bio/loki.txt diff --git a/menu/bio/molphy.txt b/menu/bio/molphy.txt new file mode 100644 index 0000000..df7d402 --- /dev/null +++ b/menu/bio/molphy.txt @@ -0,0 +1,17 @@ +Some information about MolPhy from the Debian-Med project. + +Molphy is an extensive set of tools for MOLecular PHYlogenetics. You can +get a first overview by the two manpages + + man protml + man mollist + +For further reading the files in + + /usr/share/doc/molphy + +are suggested. Moreover you can find several examples in + + /usr/share/doc/molphy/examples/tests/ + +which contains a makefile to give you an idea how to call the MolPhy tools. diff --git a/docs/bio/ncbi-epcr.txt b/menu/bio/ncbi-epcr.txt similarity index 100% rename from docs/bio/ncbi-epcr.txt rename to menu/bio/ncbi-epcr.txt diff --git a/menu/bio/ncbi-tools-bin.menu b/menu/bio/ncbi-tools-bin.menu new file mode 100644 index 0000000..c03daae --- /dev/null +++ b/menu/bio/ncbi-tools-bin.menu @@ -0,0 +1,43 @@ +# The lot of entries just blast the menu to much +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/asn2asn" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="asn2asn" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/asn2ff" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="asn2ff" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/asn2gb" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="asn2gb" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/asn2xml" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="asn2xml" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/asndhuff" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="asndhuff" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/checksub" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="checksub" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/debruijn" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="debruijn" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/entrcmd" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="entrcmd" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/fa2htgs" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="fa2htgs" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/fastamerge" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="fastamerge" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/findspl" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="findspl" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/gbseqget" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="gbseqget" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/getfeat" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="getfeat" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/getmesh" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="getmesh" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/getpub" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="getpub" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/gil2bin" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="gil2bin" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/idfetch" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="idfetch" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/indexpub" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="indexpub" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/makeset" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="makeset" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/tbl2asn" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="tbl2asn" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(libvibrant6):command="/usr/bin/vibrate /usr/bin/vecscreen" needs="X11" \ + section="Med/Biology/ncbi-tools-bin" title="vecscreen" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" diff --git a/menu/bio/ncbi-tools-x11.menu b/menu/bio/ncbi-tools-x11.menu new file mode 100644 index 0000000..ef4a0c7 --- /dev/null +++ b/menu/bio/ncbi-tools-x11.menu @@ -0,0 +1,14 @@ +?package(ncbi-tools-x11):command="/usr/bin/Cn3D-3.0" needs="X11" \ + section="Med/Biology/ncbi-tools-x11" title="Cn3D-3.0" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(ncbi-tools-x11):command="/usr/bin/Nentrez" needs="X11" \ + section="Med/Biology/ncbi-tools-x11" title="Entrez" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(ncbi-tools-x11):command="/usr/bin/Psequin" needs="X11" \ + section="Med/Biology/ncbi-tools-x11" title="Sequin" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(ncbi-tools-x11):command="/usr/bin/ddv" needs="X11" \ + section="Med/Biology/ncbi-tools-x11" title="ddv" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(ncbi-tools-x11):command="/usr/bin/entrez2" needs="X11" \ + section="Med/Biology/ncbi-tools-x11" title="entrez2" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(ncbi-tools-x11):command="/usr/bin/netentcf" needs="X11" \ + section="Med/Biology/ncbi-tools-x11" title="Entrez net config" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" +?package(ncbi-tools-x11):command="/usr/bin/udv" needs="X11" \ + section="Med/Biology/ncbi-tools-x11" title="udv" hints="Biology" icon="/usr/share/pixmaps/ncbilogo.xpm" diff --git a/menu/bio/phylip.txt b/menu/bio/phylip.txt new file mode 100644 index 0000000..03b3959 --- /dev/null +++ b/menu/bio/phylip.txt @@ -0,0 +1,26 @@ +Some information about Phylip from the Debian-Med project. + + A package of programs for inferring phylogenies. + + The PHYLogeny Inference Package is a package of programs for inferring + phylogenies (evolutionary trees) from sequences. + Methods that are available in the package include parsimony, distance + matrix, and likelihood methods, including bootstrapping and consensus + trees. Data types that can be handled include molecular sequences, gene + frequencies, restriction sites, distance matrices, and 0/1 discrete + characters. + +If you call phylip in a text console you get some help: + + Usage: /usr/bin/phylip <program> + Existing programs are: + clique dnacomp dnamlk dollop drawtree kitsch penny retree + consense dnadist dnamove dolmove factor mix protdist seqboot + contml dnainvar dnapars dolpenny fitch move protpars + contrast dnaml dnapenny drawgram gendist neighbor restml + +which is quite the same information as the Debian manpage of phylip +contains. +There is extensive documentation at /usr/share/doc/phylip and some +examples in the examples dir at this location. + \ No newline at end of file diff --git a/docs/bio/r-cran-qtl.txt b/menu/bio/r-cran-qtl.txt similarity index 100% rename from docs/bio/r-cran-qtl.txt rename to menu/bio/r-cran-qtl.txt diff --git a/docs/bio/readseq.txt b/menu/bio/readseq.txt similarity index 100% rename from docs/bio/readseq.txt rename to menu/bio/readseq.txt diff --git a/docs/cms/zope-zms.txt b/menu/cms/zope-zms.txt similarity index 100% rename from docs/cms/zope-zms.txt rename to menu/cms/zope-zms.txt diff --git a/menu/imaging-dev b/menu/dent/mozilla-browser.menu similarity index 100% rename from menu/imaging-dev rename to menu/dent/mozilla-browser.menu diff --git a/menu/dent b/menu/dent/www-browser.menu similarity index 75% rename from menu/dent rename to menu/dent/www-browser.menu index b34ef08..0fe80c6 100644 --- a/menu/dent +++ b/menu/dent/www-browser.menu @@ -1,4 +1,4 @@ ?package(med-dent):needs="X11" section="Med/Dent"\ title="OdontoLinux"\ - command="/usr/bin/med-dent"\ + command="/usr/bin/dentalpractice"\ hints="Web-Browser viewing OdontoLinux" diff --git a/menu/imaging b/menu/imaging deleted file mode 100644 index 5d7907f..0000000 --- a/menu/imaging +++ /dev/null @@ -1,10 +0,0 @@ -?package(med-imaging):needs="X11" section="Med/Imaging"\ - title="Paul" icon="paul.xpm" command="/usr/bin/paul"\ - hints="Imageviewer designed for image sequences" -?package(med-imaging):needs="X11" section="Med/Imaging"\ - title="CtSim" command="/usr/bin/ctsim"\ - hints="Computed Tomograpy Simulator" -?package(med-imaging):needs="X11" section="Med/Imaging"\ - title="xmedcon" command="/usr/bin/xmedcon"\ - icon="/usr/X11R6/include/X11/pixmaps/xmedcon.xpm"\ - hints="Medical Image (DICOM, ECAT, ...) conversion tool" diff --git a/docs/imaging-dev/ctn-dev.txt b/menu/imaging-dev/ctn-dev.txt similarity index 100% rename from docs/imaging-dev/ctn-dev.txt rename to menu/imaging-dev/ctn-dev.txt diff --git a/docs/imaging-dev/libgtkimreg-dev.txt b/menu/imaging-dev/libgtkimreg-dev.txt similarity index 100% rename from docs/imaging-dev/libgtkimreg-dev.txt rename to menu/imaging-dev/libgtkimreg-dev.txt diff --git a/docs/imaging-dev/libmdc2-dev.txt b/menu/imaging-dev/libmdc2-dev.txt similarity index 100% rename from docs/imaging-dev/libmdc2-dev.txt rename to menu/imaging-dev/libmdc2-dev.txt diff --git a/docs/imaging-dev/libminc0-dev.txt b/menu/imaging-dev/libminc0-dev.txt similarity index 100% rename from docs/imaging-dev/libminc0-dev.txt rename to menu/imaging-dev/libminc0-dev.txt diff --git a/docs/imaging/ctn.txt b/menu/imaging/ctn.txt similarity index 100% rename from docs/imaging/ctn.txt rename to menu/imaging/ctn.txt diff --git a/docs/imaging/medcon.txt b/menu/imaging/medcon.txt similarity index 100% rename from docs/imaging/medcon.txt rename to menu/imaging/medcon.txt diff --git a/docs/imaging/minc-tools.txt b/menu/imaging/minc-tools.txt similarity index 100% rename from docs/imaging/minc-tools.txt rename to menu/imaging/minc-tools.txt diff --git a/menu/pharmacy b/menu/pharmacy deleted file mode 100644 index 3968454..0000000 --- a/menu/pharmacy +++ /dev/null @@ -1,3 +0,0 @@ -?package(med-pharmacy):needs="X11" section="Med/Pharmacy" \ - title="chemtool" icon="/usr/share/pixmaps/chemtool.xpm" \ - hints="Chemical Structure Editor" command="/usr/bin/chemtool" diff --git a/menu/physics b/menu/physics deleted file mode 100644 index 1497c48..0000000 --- a/menu/physics +++ /dev/null @@ -1,12 +0,0 @@ -?package(med-physics):needs="x11" \ - section="Med/Physics" \ - title="Paw" \ - command="paw++.dynamic" -?package(med-physics):needs="text" \ - section="Med/Physics" \ - title="GNU R" \ - command="/usr/bin/R" -?package(med-physics):needs="text" \ - section="Med/Physics" \ - title="Octave (2.1)" \ - command="/usr/bin/octave2.1" diff --git a/menu/physics/octave.menu b/menu/physics/octave.menu new file mode 100644 index 0000000..87ecd6c --- /dev/null +++ b/menu/physics/octave.menu @@ -0,0 +1,4 @@ +?package(octave2.1):needs="text" \ + section="Med/Physics" \ + title="Octave (2.1)" \ + command="/usr/bin/octave2.1" diff --git a/menu/physics/r-base.menu b/menu/physics/r-base.menu new file mode 100644 index 0000000..875c8fe --- /dev/null +++ b/menu/physics/r-base.menu @@ -0,0 +1,4 @@ +?package(r-base-core):needs="text" \ + section="Med/Physics" \ + title="GNU R" \ + command="/usr/bin/R" diff --git a/menu/tools b/menu/tools/gnutrition.menu similarity index 65% rename from menu/tools rename to menu/tools/gnutrition.menu index e6e7980..7d620b0 100644 --- a/menu/tools +++ b/menu/tools/gnutrition.menu @@ -1,3 +1,3 @@ -?package(med-tools):needs="text" section="Med/Tools"\ +?package(gnutrition):needs="text" section="Med/Tools"\ title="Nutrition analysis" command="/usr/bin/gnutrition"\ hints="/usr/share/pixmaps/gnutrition.xpm" diff --git a/docs/tools/mencal.txt b/menu/tools/mencal.txt similarity index 100% rename from docs/tools/mencal.txt rename to menu/tools/mencal.txt diff --git a/tasks/bio b/tasks/bio index 277b9dd..2cc202d 100644 --- a/tasks/bio +++ b/tasks/bio @@ -1,4 +1,4 @@ -Architecture: all +Task: Biology Description: Debian-Med micro-biology packages This meta package will install micro-biology related Debian packages for use in medical research. diff --git a/tasks/bio-dev b/tasks/bio-dev index 51edcd8..41017e6 100644 --- a/tasks/bio-dev +++ b/tasks/bio-dev @@ -1,7 +1,7 @@ -Architecture: all +Task: Biology development Description: Debian-Med packages for development of micro-biology applications This meta package will install Debian packages which might be helpful for development of applications for micro-biological research. Depends: bioperl, libncbi6-dev, libvibrant6-dev, mcl -Suggests: biomode, r-base-core +Suggests: biomode, r-base diff --git a/tasks/cms b/tasks/cms index a39f0fd..65e5618 100644 --- a/tasks/cms +++ b/tasks/cms @@ -1,4 +1,4 @@ -Architecture: all +Task: Content Management Description: Debian-Med content management systems This meta package will install packages which are useful to build a content management system for medical care. diff --git a/tasks/dent b/tasks/dent index 70bb264..3f06c1e 100644 --- a/tasks/dent +++ b/tasks/dent @@ -1,4 +1,4 @@ -Architecture: all +Task: Dental Description: Debian-Med package for dental practice client This meta package will configure your system to act as client for the OdontoLinux server which provides a system for managing a dental practice. diff --git a/tasks/imaging b/tasks/imaging index 6f908f6..c4a8ddf 100644 --- a/tasks/imaging +++ b/tasks/imaging @@ -1,4 +1,4 @@ -Architecture: all +Task: Imaging Description: Debian-Med imaging packages This meta package will install Debian packages which might be useful in medical image processing. diff --git a/tasks/imaging-dev b/tasks/imaging-dev index fb958f5..17658ed 100644 --- a/tasks/imaging-dev +++ b/tasks/imaging-dev @@ -1,4 +1,4 @@ -Architecture: all +Task: Imaging Development Description: Debian-Med packages for medical image development This meta package will install Debian packages which might be useful for developing applications for medical image processing. diff --git a/tasks/pharmacy b/tasks/pharmacy index 32209d3..c5a1646 100644 --- a/tasks/pharmacy +++ b/tasks/pharmacy @@ -1,4 +1,4 @@ -Architecture: all +Task: Pharmacy Description: Debian-Med packages for pharmaceutical research This meta package contains dependencies for a collection of software and documentation which is useful for diff --git a/tasks/physics b/tasks/physics index 80e42c8..20996a1 100644 --- a/tasks/physics +++ b/tasks/physics @@ -1,4 +1,4 @@ -Architecture: all +Task: Physics Description: Debian-Med packages for medical physicists This meta package contains dependencies for a collection of software and documentation which is useful for diff --git a/tasks/tools b/tasks/tools index 892882a..990b74b 100644 --- a/tasks/tools +++ b/tasks/tools @@ -1,4 +1,4 @@ -Architecture: all +Task: Tools Description: Debian-Med several tools This meta package will install tools for several purposes in health care. Currently it just depends from mencal. -- Debian Med metapackages
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