Greetings, I have a computer with the following setup: 1)cblfs, kernel2.6.34 gcc4.4.2 2)R-2.11.1
I compiled R with BLAS and lapack using the switched ( --with-blas="- lpthread -latlas -lfptf77blas" --with-lapack="-llapack -lcblas" ). (( http://cran.r-project.org/doc/manuals/R-admin.html#Linear-algebra) ) Prior to compiling R-2.11.1 sh conigure --help gave options including the following SHLIB_LD command for linking shared libraries which contain object files from a C or Fortran compiler only SHLIB_LDFLAGS special flags used by SHLIB_LD SHLIB_CXXLDFLAGS special flags used by SHLIB_CXXLD SHLIB_FCD command for linking shared libraries which contain object files from the Fortran 95 compiler SHLIB_FCLDFLAGS special flags used by SHLIB_FCLD I did not know what to set for these and accepted whatever the defaults were. I ended up with shared-libraries which are as follows:- $R_HOME/lib/{libRblas.so,libRlapack.so } i.e. with the prefix 'lib' and the following shared-libraries withouth the 'lib' prefix. $R_HOME/modules/{R_X11.so,internet.so,lapack.so,vfonts.so } $R_HOME/library/cluster/libs/cluster.so $R_HOME/library/foreign/libs/foreign.so $R_HOME/library/grDevices/libs/grDevices.so $R_HOME/library/grid/libs/grid.so $R_HOME/library/KernSmooth/libs/KernSmooth.so $R_HOME/library/lattice/libs/lattice.so $R_HOME/library/MASS/libs/MASS.so $R_HOME/library/Matrix/libs/Matrix.so $R_HOME/library/methods/libs/methods.so $R_HOME/library/mgcv/libs/mgcv.so $R_HOME/library/nlme/libs/nlme.so $R_HOME/library/nnet/libs/nnet.so $R_HOME/library/rpart/libs/rpart.so $R_HOME/library/spatial/libs/spatial.so $R_HOME/library/splines/libs/splines.so $R_HOME/library/stats/libs/stats.so $R_HOME/library/survival/libs/survival.so $R_HOME/library/tools/libs/tools.so I am trying to compile kdeedu-4.4.5 which uses R. The linker requires shared libs with the 'lib' prefix. So all those in the $R_HOME/modules/ and $R_HOME/library/ directories need to be 'lib'-ed I symlinked the said libraries to ones with the 'lib' prefix' running make on kdeedu-4.4.5 goes to ~79 prcent ther responded with a barrage of failures like so:- ################################# /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_isLogical' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_primitive_generic' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_DotsSymbol' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_defineVar' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_NaInt' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `Rf_inherits' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_set_quick_method_check' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `getSelectedHandler' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GERaster' /usr/local/R-2.11.1/lib64/R/modules/liblapack.so: undefined reference to `Rf_allocMatrix' /usr/local/R-2.11.1/lib64/R/library/nlme/libs/libnlme.so: undefined reference to `optif9' /usr/local/R-2.11.1/lib64/R/modules/liblapack.so: undefined reference to `R_setLapackRoutines' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `PutRNGstate' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEunregisterSystem' /usr/local/R-2.11.1/lib64/R/library/splines/libs/libsplines.so: undefined reference to `R_NaN' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_isNewList' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_PrintDefaults' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `R_do_MAKE_CLASS' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `R_Busy' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `GEfromDeviceX' /usr/local/R-2.11.1/lib64/R/library/MASS/libs/libMASS.so: undefined reference to `dqrdc2_' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEExpressionWidth' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `Rf_set_iconv' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEtoDeviceHeight' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `R_UnboundValue' /usr/local/R-2.11.1/lib64/R/library/nlme/libs/libnlme.so: undefined reference to `chol_' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_ShowMessage' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_ScalarReal' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_set_standardGeneric_ptr' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `dqrcf_' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `Rf_imin2' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GENewPage' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_MakeExternalPtrFn' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GE_LJOINpar' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GECap' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_getAttrib' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `CADR' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `R_TempDir' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_NaReal' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_cons' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_alloc' /usr/local/R-2.11.1/lib64/R/library/survival/libs/libsurvival.so: undefined reference to `Rf_setVar' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_subassign3_dflt' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_isFunction' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `R_setInternetRoutines' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_lang1' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `R_chk_realloc' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_GE_checkVersionOrDie' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `R_do_slot_assign' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_NewFrameConfirm' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEMode' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_GE_rasterRotate' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_ScalarString' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_mkNamed' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_CreateAtVector' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_getCharCE' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `dpbfa_' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_GE_rasterRotatedOffset' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_ReleaseObject' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `R_GE_setVFontRoutines' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `R_registerRoutines' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_choose' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `REAL' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_ExpandFileName' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_ProtectWithIndex' /usr/local/R-2.11.1/lib64/R/library/rpart/libs/librpart.so: undefined reference to `S_alloc' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `R_Home' /usr/local/R-2.11.1/lib64/R/library/tools/libs/libtools.so: undefined reference to `Rf_mbrtowc' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_isReal' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Riconv' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `GEfromDeviceWidth' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_isString' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_RGBpar' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `interv_' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_GE_rasterScale' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `R_CHAR' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_nrows' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `addInputHandler' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_FindNamespace' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `Rf_VectorToPairList' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `TYPEOF' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEExpressionHeight' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_lang3' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_GetOption' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_isNumeric' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_lengthgets' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_sign' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `unif_rand' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_set_prim_method' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `R_DimNamesSymbol' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_isMatrix' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `Rf_imax2' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `CADDDR' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_EncodeElement' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_checkArityCall' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_chk_free' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Rf_ScalarLogical' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `GetRNGstate' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `rchkusr_' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `R_PosInf' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `rwarn_' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `mbcslocale' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_lang2' /usr/local/R-2.11.1/lib64/R/library/tools/libs/libtools.so: undefined reference to `Rf_mkCharCE' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `Rf_NewEnvironment' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_isEnvironment' /usr/local/R-2.11.1/lib64/R/library/mgcv/libs/libmgcv.so: undefined reference to `dchdc_' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEText' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `R_GE_str2col' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `GEtoDeviceY' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Riconv_close' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_ucstoutf8' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_PreserveObject' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `LENGTH' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `STRING_ELT' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `GEfromDeviceY' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `Rf_init_con' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_isLanguage' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `GEgetDevice' /usr/local/R-2.11.1/lib64/R/library/KernSmooth/libs/libKernSmooth.so: undefined reference to `dqrsl_' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `dblepr_' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_strtod' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `Rf_mkString' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `R_MakeExternalPtr' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GERect' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `vmaxset' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `R_isort' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `R_tmpnam' /usr/local/R-2.11.1/lib64/R/library/nlme/libs/libnlme.so: undefined reference to `dtrsl_' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_Reprotect' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_translateChar' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `R_RegisterCCallable' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `CADDR' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `Rf_isValidString' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_classgets' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `locale2charset' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_lang4' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `mbcsToUcs2' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_onintr' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `R_pow' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `Rprintf' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_GE_rasterResizeForRotation' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEPretty' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_envlength' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_eval' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_findVarInFrame' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `R_SelectEx' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_pgamma' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `LOGICAL' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GESymbol' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `SET_PRVALUE' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_GE_rasterInterpolate' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `R_ExternalPtrTag' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `REprintf' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_warning' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `Rf_findVarInFrame3' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_NoDevices' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_asInteger' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_isNull' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `GEaddDevice2' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_isInteger' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GE_LTYpar' /usr/local/R-2.11.1/lib64/R/modules/liblapack.so: undefined reference to `Rf_unprotect_ptr' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_begincontext' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `GELine' /usr/local/R-2.11.1/lib64/R/library/MASS/libs/libMASS.so: undefined reference to `vmmin' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `do_set_prim_method' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `COMPLEX' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_MissingArg' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `R_ExternalPtrAddr' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_isSymbol' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEcurrentDevice' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `Rf_isComplex' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_qnorm5' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GE_LENDpar' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_NamesSymbol' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEStrHeight' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `removeInputHandler' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEStrWidth' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_RGBpar3' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_findVarLocInFrame' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_asLogical' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `dummy_vfprintf' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_primitive_methods' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_isExpression' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `R_wait_usec' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GECircle' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `R_BlankString' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_gammafn' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_interrupts_suspended' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `UNIMPLEMENTED' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEtoDeviceWidth' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_data_class' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `R_system' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `Rf_substitute' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_CheckDeviceAvailable' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_GE_rasterRotatedSize' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `Rf_fmax2' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_ndevNumber' /usr/local/R-2.11.1/lib64/R/modules/liblapack.so: undefined reference to `Rf_asChar' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_chk_calloc' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_isBlankString' /usr/local/R-2.11.1/lib64/R/library/MASS/libs/libMASS.so: undefined reference to `R_rsort' /usr/local/R-2.11.1/lib64/R/modules/liblapack.so: undefined reference to `R_AccuracyInfo' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Ri18n_wctype' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_duplicate' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `R_RowNamesSymbol' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_dhyper' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `SET_VECTOR_ELT' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_errorcall' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEdirtyDevice' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_str2type' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `R_ignore_SIGPIPE' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Rf_fmin2' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `Rf_allocS4Object' /usr/local/R-2.11.1/lib64/R/library/MASS/libs/libMASS.so: undefined reference to `Rf_rPsort' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `R_popen' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEregisterSystem' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Riconv_open' /usr/local/R-2.11.1/lib64/R/library/nlme/libs/libnlme.so: undefined reference to `rs_' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `SETLENGTH' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_pnorm5' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `INTEGER' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_interrupts_pending' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_IsNA' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `CAD4R' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEstring_to_pch' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_BaseEnv' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEMathText' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GE_LTYget' /usr/local/R-2.11.1/lib64/R/modules/liblapack.so: undefined reference to `R_NegInf' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `dpbsl_' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `R_PolledEvents' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_setX11Routines' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `getInputHandler' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_setAttrib' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `Rf_fsign' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `R_atof' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Rf_fround' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `intpr_' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `SETCDR' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_fopen' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Ri18n_wcwidth' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Rf_utf8towcs' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEinitDisplayList' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_error' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `GEplayDisplayList' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `GEcreateDevDesc' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_ClassSymbol' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `GEtoDeviceX' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_execMethod' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `Rf_namesgets' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `R_finite' /usr/local/R-2.11.1/lib64/R/modules/libinternet.so: undefined reference to `dummy_fgetc' /usr/local/R-2.11.1/lib64/R/library/KernSmooth/libs/libKernSmooth.so: undefined reference to `dqrdc_' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEdeviceDirty' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `R_CheckUserInterrupt' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEPolygon' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `d1mach_' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `R_CheckStack' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Ri18n_iswctype' /usr/local/R-2.11.1/lib64/R/library/grDevices/libs/libgrDevices.so: undefined reference to `Rf_strIsASCII' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `dsvdc_' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_warningcall' /usr/local/R-2.11.1/lib64/R/library/cluster/libs/libcluster.so: undefined reference to `R_useDynamicSymbols' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `vmaxget' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `Rf_col2name' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_SourceSymbol' /usr/local/R-2.11.1/lib64/R/library/stats/libs/libstats.so: undefined reference to `rcont2' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_DimSymbol' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_ucstomb' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `R_do_new_object' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_InputHandlers' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `R_PackageSymbol' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `IS_S4_OBJECT' /usr/local/R-2.11.1/lib64/R/library/Matrix/libs/libMatrix.so: undefined reference to `R_do_slot' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEXspline' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `R_NaString' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GESetClip' /usr/local/R-2.11.1/lib64/R/modules/libvfonts.so: undefined reference to `GEfromDeviceHeight' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_asReal' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_deferred_default_method' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_killDevice' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_GetVarLocMISSING' /usr/local/R-2.11.1/lib64/R/library/methods/libs/libmethods.so: undefined reference to `R_MethodsNamespace' /usr/local/R-2.11.1/lib64/R/library/foreign/libs/libforeign.so: undefined reference to `Rf_ScalarInteger' /usr/local/R-2.11.1/lib64/R/library/grid/libs/libgrid.so: undefined reference to `GEPolyline' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_coerceVector' /usr/local/R-2.11.1/lib64/R/modules/libR_X11.so: undefined reference to `Rf_endcontext' ########################### QUESTIONS: A) can one just symlink the libs say for example cluster.so to libcluster.so ? OR B) does any on list know the SHLIB_LD SHLIB_LDFLAGS SHLIB_CXXLDFLAGS SHLIB_FCD SHLIB_FCLDFLAGS settings for compiling R and do these result in so libs with the lib prefix? C) are the 'undefined references' in the compiler spew above due to failures to detect header files or sonmething else and if so what so? suggestions welcomed. luxInteg -- http://linuxfromscratch.org/mailman/listinfo/blfs-support FAQ: http://www.linuxfromscratch.org/blfs/faq.html Unsubscribe: See the above information page
