Does anyone know of a structure database that can be queried using an
RDF query language like SPARQL?  PubChemRDF can be accessed in RDF
format, but it encodes structures as SMILES strings, which cannot be
queried in this way.

If not, can anyone suggest open source software that might be used to
construct a modest RDF dataset from an existing structure database for
the purpose of experimenting?  For example, software that can translate
SMILES strings into an annotated graph data structure of some sort?

Thanks in advance for any suggestions.




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