I think that you may find this service interesting:
https://jcheminf.biomedcentral.com/articles/10.1186/s13321-019-0367-2

Jakub


> Does anyone know of a structure database that can be queried using an
> RDF query language like SPARQL?  PubChemRDF can be accessed in RDF
> format, but it encodes structures as SMILES strings, which cannot be
> queried in this way.


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