There were 2. One I just put away a fix for (Loading an SGF file would lose the CMARK for any candidate move that was at the bottom of the move list when originally saved). The other I know about is this one (And I¹ll come up with an exact test to show how to reproduce this), but you can read about it here:
http://lists.gnu.org/archive/html/bug-gnubg/2009-06/msg00199.html
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