See
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/4609/display/redirect?page=changes>
Changes:
[zyichi] [BEAM-13388] Fix broken google cloud dlp test.
[zyichi] [BEAM-13373] Increase python post commit timeout to reduce chance of
[msbukal] Exclude FhirIOPatientEverything from v2 dataflow runner intg test.
[noreply] [BEAM-13371] Fix bug where DataFrame overview snippets don't show up
[noreply] [BEAM-12976] Implement pipeline visitor to get global field access in…
------------------------------------------
[...truncated 48.22 MB...]
| _PassThroughThenCleanup(files_to_remove_pcoll))
apache_beam/examples/dataframe/flight_delays.py:45
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/examples/dataframe/flight_delays.py>:45:
FutureWarning: Dropping of nuisance columns in DataFrame reductions (with
'numeric_only=None') is deprecated; in a future version this will raise
TypeError. Select only valid columns before calling the reduction.
return airline_df[at_top_airports].mean()
apache_beam/dataframe/io.py:593
apache_beam/dataframe/io.py:593
apache_beam/dataframe/io.py:593
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/dataframe/io.py>:593:
FutureWarning: WriteToFiles is experimental.
sink=lambda _: _WriteToPandasFileSink(
apache_beam/io/fileio.py:550
apache_beam/io/fileio.py:550
apache_beam/io/fileio.py:550
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BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
p.options.view_as(GoogleCloudOptions).temp_location or
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
apache_beam/io/gcp/bigquery.py:2118
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BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
self.table_reference.projectId = pcoll.pipeline.options.view_as(
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
apache_beam/io/gcp/bigquery_file_loads.py:1112
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery_file_loads.py>:1112:
BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
temp_location = p.options.view_as(GoogleCloudOptions).temp_location
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
apache_beam/io/gcp/bigquery_file_loads.py:1114
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery_file_loads.py>:1114:
BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
p.options.view_as(GoogleCloudOptions).job_name or 'AUTOMATIC_JOB_NAME')
apache_beam/io/gcp/tests/utils.py:100
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/tests/utils.py>:100:
PendingDeprecationWarning: Client.dataset is deprecated and will be removed in
a future version. Use a string like 'my_project.my_dataset' or a
cloud.google.bigquery.DatasetReference object, instead.
table_ref = client.dataset(dataset_id).table(table_id)
apache_beam/io/gcp/bigquery_test.py:1124
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery_test.py>:1124:
BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
streaming = self.test_pipeline.options.view_as(StandardOptions).streaming
apache_beam/io/gcp/bigquery_read_it_test.py:167
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery_read_it_test.py>:167:
BeamDeprecationWarning: BigQuerySource is deprecated since 2.25.0. Use
ReadFromBigQuery instead.
beam.io.BigQuerySource(query=self.query, use_standard_sql=True)))
apache_beam/io/gcp/big_query_query_to_table_pipeline.py:84
apache_beam/io/gcp/big_query_query_to_table_pipeline.py:84
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/big_query_query_to_table_pipeline.py>:84:
BeamDeprecationWarning: BigQuerySource is deprecated since 2.25.0. Use
ReadFromBigQuery instead.
kms_key=kms_key))
apache_beam/runners/dataflow/ptransform_overrides.py:323
apache_beam/runners/dataflow/ptransform_overrides.py:323
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/runners/dataflow/ptransform_overrides.py>:323:
BeamDeprecationWarning: BigQuerySink is deprecated since 2.11.0. Use
WriteToBigQuery instead.
kms_key=self.kms_key))
apache_beam/io/gcp/bigquery_read_it_test.py:556
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery_read_it_test.py>:556:
BeamDeprecationWarning: BigQuerySource is deprecated since 2.25.0. Use
ReadFromBigQuery instead.
beam.io.BigQuerySource(query=self.query, use_standard_sql=True)))
apache_beam/ml/gcp/cloud_dlp_it_test.py:77
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/ml/gcp/cloud_dlp_it_test.py>:77:
FutureWarning: MaskDetectedDetails is experimental.
inspection_config=INSPECT_CONFIG))
apache_beam/io/gcp/bigquery_read_it_test.py:670
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery_read_it_test.py>:670:
FutureWarning: ReadAllFromBigQuery is experimental.
| beam.io.ReadAllFromBigQuery())
apache_beam/io/gcp/bigquery.py:2588
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery.py>:2588:
BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
job_name = pcoll.pipeline.options.view_as(GoogleCloudOptions).job_name
apache_beam/io/gcp/bigquery.py:2589
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery.py>:2589:
BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
project = pcoll.pipeline.options.view_as(GoogleCloudOptions).project
apache_beam/io/gcp/bigquery.py:2602
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/bigquery.py>:2602:
BeamDeprecationWarning: options is deprecated since First stable release.
References to <pipeline>.options will not be supported
options=pcoll.pipeline.options,
apache_beam/ml/gcp/cloud_dlp_it_test.py:87
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/ml/gcp/cloud_dlp_it_test.py>:87:
FutureWarning: InspectForDetails is experimental.
| beam.ParDo(extract_inspection_results).with_outputs(
-- Docs: https://docs.pytest.org/en/latest/warnings.html
- generated xml file:
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/pytest_postCommitIT-df-py37.xml>
-
[31m[1m======= 3 failed, 55 passed, 11 skipped, 179 warnings in 6727.41
seconds =======[0m
> Task :sdks:python:test-suites:dataflow:py37:postCommitIT FAILED
> Task :sdks:python:test-suites:dataflow:py37:spannerioIT
>>> RUNNING integration tests with pipeline options:
>>> --runner=TestDataflowRunner --project=apache-beam-testing
>>> --region=us-central1
>>> --staging_location=gs://temp-storage-for-end-to-end-tests/staging-it
>>> --temp_location=gs://temp-storage-for-end-to-end-tests/temp-it
>>> --output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
>>> --sdk_location=<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/build/apache-beam.tar.gz>
>>> --requirements_file=postcommit_requirements.txt --num_workers=1
>>> --sleep_secs=20
>>> --dataflow_worker_jar=<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/runners/google-cloud-dataflow-java/worker/build/libs/beam-runners-google-cloud-dataflow-java-fn-api-worker-2.36.0-SNAPSHOT.jar>
>>>
>>> --kms_key_name=projects/apache-beam-testing/locations/global/keyRings/beam-it/cryptoKeys/test
>>>
>>> --dataflow_kms_key=projects/apache-beam-testing/locations/global/keyRings/beam-it/cryptoKeys/test
>>> pytest options: --capture=no --timeout=4500 --color=yes
>>> --log-cli-level=INFO --numprocesses=8 --dist=loadfile
>>> collect markers: -m=spannerio_it
[1m============================= test session starts
==============================[0m
platform linux -- Python 3.7.10, pytest-4.6.11, py-1.11.0, pluggy-0.13.1
rootdir:
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python,>
inifile: pytest.ini
plugins: xdist-1.34.0, timeout-1.4.2, forked-1.3.0, requests-mock-1.9.3
timeout: 4500.0s
timeout method: signal
timeout func_only: False
gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I
[1m[gw0] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0m[1m[gw1] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0m[1m[gw2] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0m[1m[gw3] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0m[1m[gw4] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0m[1m[gw5] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0m[1m[gw6] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0m[1m[gw7] Python 3.7.10 (default, Feb 20 2021, 21:21:24) -- [GCC 5.4.0
20160609]
[0mgw0 [15] / gw1 [15] / gw2 [15] / gw3 [15] / gw4 [15] / gw5 [15] / gw6 [15]
/ gw7 [15]
scheduling tests via LoadFileScheduling
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_read_via_sql
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_metrics_error_call
[gw1] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_metrics_error_call
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_metrics_ok_call
[gw1] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_metrics_ok_call
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_spanner_error
[gw1] [32mPASSED[0m
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_spanner_error
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_spanner_update
[gw0] [32mPASSED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_read_via_sql
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_read_via_table
[gw1] [32mPASSED[0m
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_spanner_update
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_write_batches
[gw0] [32mPASSED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_read_via_table
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_sql_metrics_error_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_sql_metrics_error_call
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_sql_metrics_ok_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_sql_metrics_ok_call
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_table_metrics_error_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_table_metrics_error_call
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_table_metrics_ok_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_table_metrics_ok_call
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_sql_metrics_error_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_sql_metrics_error_call
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_sql_metrics_ok_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_sql_metrics_ok_call
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_table_metrics_error_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_table_metrics_error_call
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_table_metrics_ok_call
[gw0] [33mSKIPPED[0m
apache_beam/io/gcp/experimental/spannerio_read_it_test.py::SpannerReadIntegrationTest::test_transaction_table_metrics_ok_call
[gw1] [32mPASSED[0m
apache_beam/io/gcp/experimental/spannerio_write_it_test.py::SpannerWriteIntegrationTest::test_write_batches
[33m=============================== warnings summary
===============================[0m
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/build/gradleenv/-1734967052/lib/python3.7/site-packages/_pytest/mark/structures.py>:335
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<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/build/gradleenv/-1734967052/lib/python3.7/site-packages/_pytest/mark/structures.py>:335:
PytestUnknownMarkWarning: Unknown pytest.mark.spannerio_it - is this a typo?
You can register custom marks to avoid this warning - for details, see
https://docs.pytest.org/en/latest/mark.html
PytestUnknownMarkWarning,
apache_beam/io/gcp/experimental/spannerio_write_it_test.py:190
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/experimental/spannerio_write_it_test.py>:190:
FutureWarning: WriteToSpanner is experimental. No backwards-compatibility
guarantees.
database_id=self.TEST_DATABASE))
apache_beam/io/gcp/experimental/spannerio_read_it_test.py:128
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/experimental/spannerio_read_it_test.py>:128:
FutureWarning: ReadFromSpanner is experimental. No backwards-compatibility
guarantees.
sql="select * from Users")
apache_beam/io/gcp/experimental/spannerio_write_it_test.py:171
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/experimental/spannerio_write_it_test.py>:171:
FutureWarning: WriteToSpanner is experimental. No backwards-compatibility
guarantees.
database_id=self.TEST_DATABASE))
apache_beam/io/gcp/experimental/spannerio_read_it_test.py:117
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/experimental/spannerio_read_it_test.py>:117:
FutureWarning: ReadFromSpanner is experimental. No backwards-compatibility
guarantees.
columns=["UserId", "Key"])
apache_beam/io/gcp/experimental/spannerio_write_it_test.py:135
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/apache_beam/io/gcp/experimental/spannerio_write_it_test.py>:135:
FutureWarning: WriteToSpanner is experimental. No backwards-compatibility
guarantees.
max_batch_size_bytes=250))
-- Docs: https://docs.pytest.org/en/latest/warnings.html
- generated xml file:
<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/pytest_postCommitIT-df-py37.xml>
-
[33m[1m============= 5 passed, 10 skipped, 13 warnings in 1579.76 seconds
=============[0m
FAILURE: Build failed with an exception.
* Where:
Script
'<https://ci-beam.apache.org/job/beam_PostCommit_Python37/ws/src/sdks/python/test-suites/dataflow/common.gradle'>
line: 120
* What went wrong:
Execution failed for task ':sdks:python:test-suites:dataflow:py37:postCommitIT'.
> Process 'command 'sh'' finished with non-zero exit value 1
* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug
option to get more log output. Run with --scan to get full insights.
* Get more help at https://help.gradle.org
Deprecated Gradle features were used in this build, making it incompatible with
Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See
https://docs.gradle.org/6.9.1/userguide/command_line_interface.html#sec:command_line_warnings
BUILD FAILED in 2h 35m 14s
217 actionable tasks: 181 executed, 32 from cache, 4 up-to-date
Publishing build scan...
https://gradle.com/s/wqodjfmrzzw6c
Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure
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