See <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/2081/display/redirect>
Changes: ------------------------------------------ [...truncated 13.39 KB...] Processing /home/jenkins/.cache/pip/wheels/94/5a/46/d8f983987fd0c952afdb2db57ec55e7a7642e88db2d57ab674/distlib-0.3.0-py3-none-any.whl Collecting importlib-resources<2,>=1.0; python_version < "3.7" Using cached importlib_resources-1.0.2-py2.py3-none-any.whl (32 kB) Collecting appdirs<2,>=1.4.3 Using cached appdirs-1.4.3-py2.py3-none-any.whl (12 kB) Collecting zipp>=0.5 Using cached zipp-1.1.0-py2.py3-none-any.whl (4.6 kB) Installing collected packages: six, zipp, importlib-metadata, distlib, importlib-resources, filelock, appdirs, virtualenv, py, toml, pluggy, tox, protobuf, grpcio, grpcio-tools, future Successfully installed appdirs-1.4.3 distlib-0.3.0 filelock-3.0.12 future-0.16.0 grpcio-1.27.1 grpcio-tools-1.14.2 importlib-metadata-1.5.0 importlib-resources-1.0.2 pluggy-0.13.1 protobuf-3.11.3 py-1.8.1 six-1.14.0 toml-0.10.0 tox-3.11.1 virtualenv-20.0.3 zipp-1.1.0 > Task :sdks:python:test-suites:direct:py2:mongodbioIT Using default tag: latest latest: Pulling from library/mongo Digest: sha256:14b612325925ca60d9ccbc710aa4c2dbfb74106229f60f4fee9d42fab0281f6f Status: Image is up to date for mongo:latest dee74ddd5532a171e731e322da19b64b830cb86f433ba26aebceaaf849932b57 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Obtaining file://<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python> > Task :sdks:python:test-suites:direct:py35:mongodbioIT FAILED Using default tag: latest latest: Pulling from library/mongo Digest: sha256:14b612325925ca60d9ccbc710aa4c2dbfb74106229f60f4fee9d42fab0281f6f Status: Image is up to date for mongo:latest edda88c9e89b03b5857de07d480ba0f8673d987015c29d2465fd4d5cc2f1e442 Obtaining file://<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python> Processing /home/jenkins/.cache/pip/wheels/50/24/4d/4580ca4a299f1ad6fd63443e6e584cb21e9a07988e4aa8daac/crcmod-1.7-cp35-cp35m-linux_x86_64.whl Processing /home/jenkins/.cache/pip/wheels/59/b1/91/f02e76c732915c4015ab4010f3015469866c1eb9b14058d8e7/dill-0.3.1.1-cp35-none-any.whl Collecting fastavro<0.22,>=0.21.4 Using cached fastavro-0.21.24-cp35-cp35m-manylinux1_x86_64.whl (1.2 MB) Requirement already satisfied: future<1.0.0,>=0.16.0 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from apache-beam==2.20.0.dev0) (0.16.0) Requirement already satisfied: grpcio<2,>=1.12.1 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from apache-beam==2.20.0.dev0) (1.27.1) Processing /home/jenkins/.cache/pip/wheels/fe/a7/05/23e3699975fc20f8a30e00ac1e515ab8c61168e982abe4ce70/hdfs-2.5.8-cp35-none-any.whl Processing /home/jenkins/.cache/pip/wheels/6d/41/4b/2b369d6e2b7eaebcdd423516d3fb659c7658c16a2be8fd04ec/httplib2-0.12.0-cp35-none-any.whl Collecting mock<3.0.0,>=1.0.1 Using cached mock-2.0.0-py2.py3-none-any.whl (56 kB) Collecting numpy<2,>=1.14.3 Using cached numpy-1.18.1-cp35-cp35m-manylinux1_x86_64.whl (19.9 MB) Collecting pymongo<4.0.0,>=3.8.0 Using cached pymongo-3.10.1-cp35-cp35m-manylinux2014_x86_64.whl (459 kB) Processing /home/jenkins/.cache/pip/wheels/48/f7/87/b932f09c6335dbcf45d916937105a372ab14f353a9ca431d7d/oauth2client-3.0.0-cp35-none-any.whl Requirement already satisfied: protobuf<4,>=3.5.0.post1 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from apache-beam==2.20.0.dev0) (3.11.3) Collecting pydot<2,>=1.2.0 Using cached pydot-1.4.1-py2.py3-none-any.whl (19 kB) Collecting python-dateutil<3,>=2.8.0 Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB) Collecting pytz>=2018.3 Using cached pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting avro-python3<2.0.0,>=1.8.1 Using cached avro-python3-1.9.2.tar.gz (37 kB) ERROR: Command errored out with exit status 1: command: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/bin/python3.5> -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ctbsuf0m/avro-python3/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ctbsuf0m/avro-python3/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-ctbsuf0m/avro-python3/pip-egg-info cwd: /tmp/pip-install-ctbsuf0m/avro-python3/ Complete output (5 lines): Traceback (most recent call last): File "<string>", line 1, in <module> File "/tmp/pip-install-ctbsuf0m/avro-python3/setup.py", line 41, in <module> import pycodestyle ImportError: No module named 'pycodestyle' ---------------------------------------- ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. > Task :sdks:python:test-suites:direct:py2:mongodbioIT Processing /home/jenkins/.cache/pip/wheels/50/24/4d/4580ca4a299f1ad6fd63443e6e584cb21e9a07988e4aa8daac/crcmod-1.7-cp27-cp27mu-linux_x86_64.whl Processing /home/jenkins/.cache/pip/wheels/59/b1/91/f02e76c732915c4015ab4010f3015469866c1eb9b14058d8e7/dill-0.3.1.1-cp27-none-any.whl Collecting fastavro<0.22,>=0.21.4 Using cached fastavro-0.21.24-cp27-cp27mu-manylinux1_x86_64.whl (1.0 MB) Requirement already satisfied: future<1.0.0,>=0.16.0 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from apache-beam==2.20.0.dev0) (0.16.0) Requirement already satisfied: grpcio<2,>=1.12.1 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from apache-beam==2.20.0.dev0) (1.27.1) Processing /home/jenkins/.cache/pip/wheels/fe/a7/05/23e3699975fc20f8a30e00ac1e515ab8c61168e982abe4ce70/hdfs-2.5.8-cp27-none-any.whl Processing 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requests-2.22.0-py2.py3-none-any.whl (57 kB) Collecting pbr>=0.11 Using cached pbr-5.4.4-py2.py3-none-any.whl (110 kB) Collecting rsa>=3.1.4 Using cached rsa-4.0-py2.py3-none-any.whl (38 kB) Collecting pyasn1>=0.1.7 Using cached pyasn1-0.4.8-py2.py3-none-any.whl (77 kB) Collecting pyasn1-modules>=0.0.5 Using cached pyasn1_modules-0.2.8-py2.py3-none-any.whl (155 kB) Requirement already satisfied: setuptools in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from protobuf<4,>=3.5.0.post1->apache-beam==2.20.0.dev0) (44.0.0) Collecting pyparsing>=2.1.4 Using cached pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting monotonic>=0.6; python_version == "2.7" Using cached monotonic-1.5-py2.py3-none-any.whl (5.3 kB) Collecting atomicwrites>=1.0 Using cached atomicwrites-1.3.0-py2.py3-none-any.whl (5.9 kB) Requirement already satisfied: pluggy<1.0,>=0.12 in 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python_version < "3" in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.20.0.dev0) (0.6.0.post1) Requirement already satisfied: zipp>=0.5 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.20.0.dev0) (1.1.0) Requirement already satisfied: configparser>=3.5; python_version < "3" in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.20.0.dev0) (4.0.2) Requirement already satisfied: scandir; python_version < "3.5" in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from pathlib2>=2.2.0; python_version < "3.6"->pytest<5.0,>=4.4.0->apache-beam==2.20.0.dev0) (1.10.0) Collecting apipkg>=1.4 Using cached apipkg-1.5-py2.py3-none-any.whl (4.9 kB) Installing collected packages: crcmod, dill, fastavro, docopt, certifi, chardet, idna, urllib3, requests, hdfs, httplib2, pbr, funcsigs, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot, python-dateutil, pytz, avro, pyvcf, pyarrow, typing-extensions, freezegun, nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock, monotonic, tenacity, atomicwrites, packaging, attrs, wcwidth, more-itertools, pytest, pytest-forked, apipkg, execnet, pytest-xdist, pytest-timeout, apache-beam Running setup.py develop for apache-beam Successfully installed apache-beam apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0 avro-1.9.2 certifi-2019.11.28 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.21.24 freezegun-0.3.14 funcsigs-1.0.2 hdfs-2.5.8 httplib2-0.12.0 idna-2.8 mock-2.0.0 monotonic-1.5 more-itertools-5.0.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.16.6 oauth2client-3.0.0 packaging-20.1 pandas-0.24.2 parameterized-0.7.1 pbr-5.4.4 pyarrow-0.15.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.10.1 pyparsing-2.4.6 pytest-4.6.9 pytest-forked-1.1.3 pytest-timeout-1.3.4 pytest-xdist-1.31.0 python-dateutil-2.8.1 pytz-2019.3 pyvcf-0.6.8 pyyaml-5.3 requests-2.22.0 requests-mock-1.7.0 rsa-4.0 tenacity-5.1.5 typing-extensions-3.7.4.1 urllib3-1.25.8 wcwidth-0.1.8 <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:82: UserWarning: You are using Apache Beam with Python 2. New releases of Apache Beam will soon support Python 3 only. 'You are using Apache Beam with Python 2. ' INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner. INFO:__main__:Writing 100000 documents to mongodb <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82: FutureWarning: WriteToMongoDB is experimental. known_args.batch_size)) INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function annotate_downstream_side_inputs at 0x7ff1b3657e60> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function fix_side_input_pcoll_coders at 0x7ff1b3657f50> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function lift_combiners at 0x7ff1b364f050> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_sdf at 0x7ff1b364f0c8> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_gbk at 0x7ff1b364f140> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sink_flattens at 0x7ff1b364f230> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function greedily_fuse at 0x7ff1b364f2a8> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function read_to_impulse at 0x7ff1b364f320> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function impulse_to_input at 0x7ff1b364f398> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function inject_timer_pcollections at 0x7ff1b364f500> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sort_stages at 0x7ff1b364f578> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function window_pcollection_coders at 0x7ff1b364f5f0> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler object at 0x7ff1b1313050> for environment urn: "beam:env:embedded_python:v1" INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_AppliedPTransform_Create/Impulse_3)+((ref_AppliedPTransform_Create/FlatMap(<lambda at core.py:2646>)_4)+((ref_AppliedPTransform_Create/Map(decode)_6)+((ref_AppliedPTransform_Create documents_7)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write))))))) INFO:apache_beam.runners.portability.fn_api_runner:Running (WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_18)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_19)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_20))) INFO:__main__:Writing 100000 documents to mongodb finished in 38.116 seconds INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner. INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1581531423 <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101: FutureWarning: ReadFromMongoDB is experimental. | 'Combine' >> beam.CombineGlobally(sum)) INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function annotate_downstream_side_inputs at 0x7ff1b3657e60> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function fix_side_input_pcoll_coders at 0x7ff1b3657f50> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function lift_combiners at 0x7ff1b364f050> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_sdf at 0x7ff1b364f0c8> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_gbk at 0x7ff1b364f140> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sink_flattens at 0x7ff1b364f230> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function greedily_fuse at 0x7ff1b364f2a8> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function read_to_impulse at 0x7ff1b364f320> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function impulse_to_input at 0x7ff1b364f398> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function inject_timer_pcollections at 0x7ff1b364f500> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sort_stages at 0x7ff1b364f578> ==================== INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function window_pcollection_coders at 0x7ff1b364f5f0> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler object at 0x7ff19d18b5d0> for environment urn: "beam:env:embedded_python:v1" INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write)) INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_AppliedPTransform_assert_that/Create/Impulse_26)+((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda at core.py:2646>)_27)+((ref_AppliedPTransform_assert_that/Create/Map(decode)_29)+((ref_AppliedPTransform_assert_that/Group/pair_with_0_33)+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0))))) INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_PCollection_PCollection_1_split/Read)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))))+(Combine/CombinePerKey/Group/Write)) INFO:apache_beam.runners.portability.fn_api_runner:Running ((Combine/CombinePerKey/Group/Read)+(Combine/CombinePerKey/Merge))+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_17)+(ref_PCollection_PCollection_9/Write))) INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_Combine/DoOnce/Impulse_19)+((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda at core.py:2646>)_20)+((ref_AppliedPTransform_Combine/DoOnce/Map(decode)_22)+((ref_AppliedPTransform_Combine/InjectDefault_23)+((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_30)+((ref_AppliedPTransform_assert_that/ToVoidKey_31)+(ref_AppliedPTransform_assert_that/Group/pair_with_1_34)))))))+((assert_that/Group/Flatten/Transcode/1)+(assert_that/Group/Flatten/Write/1)) INFO:apache_beam.runners.portability.fn_api_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write) INFO:apache_beam.runners.portability.fn_api_runner:Running ((assert_that/Group/GroupByKey/Read)+(ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_40))+((ref_AppliedPTransform_assert_that/Unkey_41)+(ref_AppliedPTransform_assert_that/Match_42)) INFO:__main__:Read 100000 documents from mongodb finished in 4.613 seconds mongoioit27339 mongoioit27339 FAILURE: Build failed with an exception. * Where: Build file '<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py35/build.gradle'> line: 78 * What went wrong: Execution failed for task ':sdks:python:test-suites:direct:py35:mongodbioIT'. > Process 'command 'sh'' finished with non-zero exit value 1 * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings BUILD FAILED in 1m 53s 4 actionable tasks: 4 executed Publishing build scan... https://gradle.com/s/wjvhxfb6bonpo Build step 'Invoke Gradle script' changed build result to FAILURE Build step 'Invoke Gradle script' marked build as failure --------------------------------------------------------------------- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
