See
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/2361/display/redirect?page=changes>
Changes:
[suztomo] grpc 1.27.2 and gax 1.54.0
[suztomo] bigquerystorage 0.125.0-beta
------------------------------------------
[...truncated 21.91 KB...]
root: Generating grammar tables from
/usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from
/usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from
/usr/lib/python3.5/lib2to3/PatternGrammar.txt
RefactoringTool: No changes to
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_artifact_api_pb2.py>
RefactoringTool: No changes to
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RefactoringTool: No changes to
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_expansion_api_pb2.py>
RefactoringTool: No changes to
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RefactoringTool: No changes to
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RefactoringTool: No changes to
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RefactoringTool: No changes to
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_interactive_api_pb2.py>
RefactoringTool: No changes to
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RefactoringTool: No changes to
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RefactoringTool: No changes to
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_provision_api_pb2.py>
RefactoringTool: No changes to
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RefactoringTool: No changes to
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2.py>
Traceback (most recent call last):
File
"<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/bin/futurize";,>
line 8, in <module>
sys.exit(main())
File
"<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages/libfuturize/main.py";,>
line 293, in main
options.processes)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 706, in refactor
items, write, doctests_only)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 299, in refactor
self.refactor_dir(dir_or_file, write, doctests_only)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 319, in refactor_dir
self.refactor_file(fullname, write, doctests_only)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 747, in refactor_file
*args, **kwargs)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 341, in refactor_file
input, encoding = self._read_python_source(filename)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 336, in
_read_python_source
with _open_with_encoding(filename, "r", encoding=encoding) as f:
FileNotFoundError: [Errno 2] No such file or directory:
'<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_grpc.py'>
Traceback (most recent call last):
File "<string>", line 1, in <module>
File
"<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/setup.py";,>
line 317, in <module>
'mypy': generate_protos_first(mypy),
File
"<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages/setuptools/__init__.py";,>
line 144, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.5/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File
"<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/setup.py";,>
line 241, in run
gen_protos.generate_proto_files()
File
"<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/gen_protos.py";,>
line 343, in generate_proto_files
'Error applying futurize to generated protobuf python files.')
RuntimeError: Error applying futurize to generated protobuf python files.
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check
the logs for full command output.
> Task :sdks:python:test-suites:direct:py35:mongodbioIT FAILED
> Task :sdks:python:test-suites:direct:py2:mongodbioIT
Using default tag: latest
latest: Pulling from library/mongo
Digest: sha256:701a90d2b6c60099ab705a786271dfb98d82ac8361233741c483f8a88bf0b15c
Status: Image is up to date for mongo:latest
48a6683c8625f46d6f8135dcd6ab82c63cfee97689113788c0543c9d561fb288
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020.
Please upgrade your Python as Python 2.7 is no longer maintained. A future
version of pip will drop support for Python 2.7. More details about Python 2
support in pip, can be found at
https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Obtaining
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Processing
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Processing
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Collecting fastavro<0.22,>=0.21.4
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(from apache-beam==2.21.0.dev0) (1.27.2)
Processing
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Processing
/home/jenkins/.cache/pip/wheels/6d/41/4b/2b369d6e2b7eaebcdd423516d3fb659c7658c16a2be8fd04ec/httplib2-0.12.0-cp27-none-any.whl
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Processing
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(from apache-beam==2.21.0.dev0) (3.11.3)
Collecting pydot<2,>=1.2.0
Using cached pydot-1.4.1-py2.py3-none-any.whl (19 kB)
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Collecting pytz>=2018.3
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Processing
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Requirement already satisfied: futures<4.0.0,>=3.2.0 in
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(from apache-beam==2.21.0.dev0) (3.3.0)
Processing
/home/jenkins/.cache/pip/wheels/81/91/41/3272543c0b9c61da9c525f24ee35bae6fe8f60d4858c66805d/PyVCF-0.6.8-cp27-none-any.whl
Collecting pyarrow<0.16.0,>=0.15.1
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Requirement already satisfied: typing<3.8.0,>=3.7.0 in
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(from apache-beam==2.21.0.dev0) (3.7.4.1)
Collecting typing-extensions<3.8.0,>=3.7.0
Using cached typing_extensions-3.7.4.1-py2-none-any.whl (9.0 kB)
Collecting freezegun>=0.3.12
Using cached freezegun-0.3.15-py2.py3-none-any.whl (14 kB)
Collecting nose>=1.3.7
Using cached nose-1.3.7-py2-none-any.whl (154 kB)
Processing
/home/jenkins/.cache/pip/wheels/c4/1f/cd/9250fbf2fcc179e28bb4f7ee26a4fc7525914469d83a4f0c09/nose_xunitmp-0.4.1-cp27-none-any.whl
Collecting pandas<0.25,>=0.23.4
Using cached pandas-0.24.2-cp27-cp27mu-manylinux1_x86_64.whl (10.1 MB)
Collecting parameterized<0.8.0,>=0.7.1
Using cached parameterized-0.7.1-py2.py3-none-any.whl (24 kB)
Processing
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Processing
/home/jenkins/.cache/pip/wheels/e4/76/4d/a95b8dd7b452b69e8ed4f68b69e1b55e12c9c9624dd962b191/PyYAML-5.3-cp27-cp27mu-linux_x86_64.whl
Collecting requests_mock<2.0,>=1.7
Using cached requests_mock-1.7.0-py2.py3-none-any.whl (23 kB)
Collecting tenacity<6.0,>=5.0.2
Using cached tenacity-5.1.5-py2.py3-none-any.whl (34 kB)
Collecting pytest<5.0,>=4.4.0
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Collecting pytest-xdist<2,>=1.29.0
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Collecting pytest-timeout<2,>=1.3.3
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Requirement already satisfied: six>=1.5.2 in
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(from grpcio<2,>=1.12.1->apache-beam==2.21.0.dev0) (1.14.0)
Requirement already satisfied: enum34>=1.0.4; python_version < "3.4" in
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(from grpcio<2,>=1.12.1->apache-beam==2.21.0.dev0) (1.1.9)
Processing
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Collecting requests>=2.7.0
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(from protobuf<4,>=3.5.0.post1->apache-beam==2.21.0.dev0) (44.0.0)
Collecting pyparsing>=2.1.4
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Collecting monotonic>=0.6; python_version == "2.7"
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Collecting wcwidth
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(from pytest<5.0,>=4.4.0->apache-beam==2.21.0.dev0) (1.8.1)
Collecting pytest-forked
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Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
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Requirement already satisfied: contextlib2; python_version < "3" in
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(from importlib-metadata>=0.12; python_version <
"3.8"->pytest<5.0,>=4.4.0->apache-beam==2.21.0.dev0) (0.6.0.post1)
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"3.8"->pytest<5.0,>=4.4.0->apache-beam==2.21.0.dev0) (4.0.2)
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(from pathlib2>=2.2.0; python_version <
"3.6"->pytest<5.0,>=4.4.0->apache-beam==2.21.0.dev0) (1.10.0)
Collecting apipkg>=1.4
Using cached apipkg-1.5-py2.py3-none-any.whl (4.9 kB)
Installing collected packages: crcmod, dill, fastavro, docopt, certifi, idna,
chardet, urllib3, requests, hdfs, httplib2, pbr, funcsigs, mock, numpy,
pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot,
python-dateutil, pytz, avro, pyvcf, pyarrow, typing-extensions, freezegun,
nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock,
monotonic, tenacity, atomicwrites, packaging, attrs, wcwidth, more-itertools,
pytest, pytest-forked, apipkg, execnet, pytest-xdist, pytest-timeout,
apache-beam
Running setup.py develop for apache-beam
Successfully installed apache-beam apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0
avro-1.9.2 certifi-2019.11.28 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1
docopt-0.6.2 execnet-1.7.1 fastavro-0.21.24 freezegun-0.3.15 funcsigs-1.0.2
hdfs-2.5.8 httplib2-0.12.0 idna-2.9 mock-2.0.0 monotonic-1.5
more-itertools-5.0.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.16.6
oauth2client-3.0.0 packaging-20.3 pandas-0.24.2 parameterized-0.7.1 pbr-5.4.4
pyarrow-0.15.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1
pymongo-3.10.1 pyparsing-2.4.6 pytest-4.6.9 pytest-forked-1.1.3
pytest-timeout-1.3.4 pytest-xdist-1.31.0 python-dateutil-2.8.1 pytz-2019.3
pyvcf-0.6.8 pyyaml-5.3 requests-2.23.0 requests-mock-1.7.0 rsa-4.0
tenacity-5.1.5 typing-extensions-3.7.4.1 urllib3-1.25.8 wcwidth-0.1.8
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:82:
UserWarning: You are using Apache Beam with Python 2. New releases of Apache
Beam will soon support Python 3 only.
'You are using Apache Beam with Python 2. '
INFO:root:Missing pipeline option (runner). Executing pipeline using the
default runner: DirectRunner.
INFO:__main__:Writing 100000 documents to mongodb
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82:
FutureWarning: WriteToMongoDB is experimental.
known_args.batch_size))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
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====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
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INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
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INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function expand_sdf at 0x7ff6d367f050> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function expand_gbk at 0x7ff6d367f0c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function sink_flattens at 0x7ff6d367f1b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function greedily_fuse at 0x7ff6d367f230> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function read_to_impulse at 0x7ff6d367f2a8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function impulse_to_input at 0x7ff6d367f320> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function inject_timer_pcollections at 0x7ff6d367f488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function sort_stages at 0x7ff6d367f500> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function window_pcollection_coders at 0x7ff6d367f578> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler
<apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler object at
0x7ff6d8074590> for environment urn: "beam:env:embedded_python:v1"
INFO:apache_beam.runners.portability.fn_api_runner:Running
(ref_AppliedPTransform_Create/Impulse_3)+((ref_AppliedPTransform_Create/FlatMap(<lambda
at
core.py:2643>)_4)+((ref_AppliedPTransform_Create/Map(decode)_6)+((ref_AppliedPTransform_Create
documents_7)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write)))))))
INFO:apache_beam.runners.portability.fn_api_runner:Running
(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_18)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_19)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_20)))
INFO:__main__:Writing 100000 documents to mongodb finished in 81.077 seconds
INFO:root:Missing pipeline option (runner). Executing pipeline using the
default runner: DirectRunner.
INFO:__main__:Reading from mongodb
beam_mongodbio_it_db:integration_test_1583857442
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101:
FutureWarning: ReadFromMongoDB is experimental.
| 'Combine' >> beam.CombineGlobally(sum))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function annotate_downstream_side_inputs at 0x7ff6d367ede8>
====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function fix_side_input_pcoll_coders at 0x7ff6d367eed8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function lift_combiners at 0x7ff6d367ef50> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function expand_sdf at 0x7ff6d367f050> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function expand_gbk at 0x7ff6d367f0c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function sink_flattens at 0x7ff6d367f1b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function greedily_fuse at 0x7ff6d367f230> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function read_to_impulse at 0x7ff6d367f2a8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function impulse_to_input at 0x7ff6d367f320> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function inject_timer_pcollections at 0x7ff6d367f488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function sort_stages at 0x7ff6d367f500> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:====================
<function window_pcollection_coders at 0x7ff6d367f578> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler
<apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler object at
0x7ff6d8074610> for environment urn: "beam:env:embedded_python:v1"
INFO:apache_beam.runners.portability.fn_api_runner:Running
((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running
(ref_PCollection_PCollection_1_split/Read)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))))+(Combine/CombinePerKey/Group/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running
((Combine/CombinePerKey/Group/Read)+(Combine/CombinePerKey/Merge))+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_17)+(ref_PCollection_PCollection_9/Write)))
INFO:apache_beam.runners.portability.fn_api_runner:Running
((ref_AppliedPTransform_Combine/DoOnce/Impulse_19)+((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda
at
core.py:2643>)_20)+((ref_AppliedPTransform_Combine/DoOnce/Map(decode)_22)+((ref_AppliedPTransform_Combine/InjectDefault_23)+((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_30)+((ref_AppliedPTransform_assert_that/ToVoidKey_31)+(ref_AppliedPTransform_assert_that/Group/pair_with_1_34)))))))+((assert_that/Group/Flatten/Transcode/1)+(assert_that/Group/Flatten/Write/1))
INFO:apache_beam.runners.portability.fn_api_runner:Running
(ref_AppliedPTransform_assert_that/Create/Impulse_26)+((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda
at
core.py:2643>)_27)+((ref_AppliedPTransform_assert_that/Create/Map(decode)_29)+((ref_AppliedPTransform_assert_that/Group/pair_with_0_33)+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0)))))
INFO:apache_beam.runners.portability.fn_api_runner:Running
(assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write)
INFO:apache_beam.runners.portability.fn_api_runner:Running
((assert_that/Group/GroupByKey/Read)+(ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_40))+((ref_AppliedPTransform_assert_that/Unkey_41)+(ref_AppliedPTransform_assert_that/Match_42))
INFO:__main__:Read 100000 documents from mongodb finished in 4.987 seconds
mongoioit27986
mongoioit27986
FAILURE: Build failed with an exception.
* Where:
Build file
'<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py35/build.gradle'>
line: 78
* What went wrong:
Execution failed for task ':sdks:python:test-suites:direct:py35:mongodbioIT'.
> Process 'command 'sh'' finished with non-zero exit value 1
* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug
option to get more log output. Run with --scan to get full insights.
* Get more help at https://help.gradle.org
Deprecated Gradle features were used in this build, making it incompatible with
Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See
https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings
BUILD FAILED in 2m 37s
4 actionable tasks: 4 executed
Publishing build scan...
https://gradle.com/s/l7b2phlhougli
Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure
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