See <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/8/display/redirect?page=changes>
Changes: [kcweaver] [BEAM-10234] Fix error message for missing licenses. [Robin Qiu] Simple code cleanup for ZetaSqlUtils [noreply] [BEAM-9951] Adding integration tests for synthetic pipelines in Go [noreply] [BEAM-9217] Update DoFn javadoc for schema type translation (#11984) [noreply] Bump default Pubsub timeout to 60 seconds (#11985) [noreply] Merge pull request #11950 from [BEAM-8596]: Add SplunkIO transform to [noreply] Support HOP and SESSION as TVF (#11868) ------------------------------------------ [...truncated 22.06 KB...] Collecting wcwidth Using cached wcwidth-0.2.4-py2.py3-none-any.whl (30 kB) Collecting more-itertools<6.0.0,>=4.0.0; python_version <= "2.7" Using cached more_itertools-5.0.0-py2-none-any.whl (52 kB) Requirement already satisfied: pathlib2>=2.2.0; python_version < "3.6" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from pytest<5.0,>=4.4.0->apache-beam==2.23.0.dev0) (2.3.5) Requirement already satisfied: py>=1.5.0 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from pytest<5.0,>=4.4.0->apache-beam==2.23.0.dev0) (1.8.1) Collecting pytest-forked Using cached pytest_forked-1.1.3-py2.py3-none-any.whl (4.5 kB) Collecting execnet>=1.1 Using cached execnet-1.7.1-py2.py3-none-any.whl (39 kB) Collecting certifi>=2017.4.17 Using cached certifi-2020.4.5.2-py2.py3-none-any.whl (157 kB) Collecting idna<3,>=2.5 Using cached idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Using cached urllib3-1.25.9-py2.py3-none-any.whl (126 kB) Requirement already satisfied: contextlib2; python_version < "3" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.23.0.dev0) (0.6.0.post1) Requirement already satisfied: zipp>=0.5 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.23.0.dev0) (1.2.0) Requirement already satisfied: configparser>=3.5; python_version < "3" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.23.0.dev0) (4.0.2) Collecting backports.functools-lru-cache>=1.2.1; python_version < "3.2" Using cached backports.functools_lru_cache-1.6.1-py2.py3-none-any.whl (5.7 kB) Requirement already satisfied: scandir; python_version < "3.5" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from pathlib2>=2.2.0; python_version < "3.6"->pytest<5.0,>=4.4.0->apache-beam==2.23.0.dev0) (1.10.0) Collecting apipkg>=1.4 Using cached apipkg-1.5-py2.py3-none-any.whl (4.9 kB) Installing collected packages: crcmod, dill, pytz, fastavro, docopt, certifi, idna, chardet, urllib3, requests, hdfs, httplib2, pbr, funcsigs, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot, python-dateutil, typing-extensions, avro, pyvcf, pyarrow, freezegun, nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock, monotonic, tenacity, atomicwrites, packaging, attrs, backports.functools-lru-cache, wcwidth, more-itertools, pytest, pytest-forked, apipkg, execnet, pytest-xdist, pytest-timeout, apache-beam Running setup.py develop for apache-beam Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-19.3.0 avro-1.9.2 backports.functools-lru-cache-1.6.1 certifi-2020.4.5.2 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.4 freezegun-0.3.15 funcsigs-1.0.2 hdfs-2.5.8 httplib2-0.17.4 idna-2.9 mock-2.0.0 monotonic-1.5 more-itertools-5.0.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.16.6 oauth2client-3.0.0 packaging-20.4 pandas-0.24.2 parameterized-0.7.4 pbr-5.4.5 pyarrow-0.16.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.10.1 pyparsing-2.4.7 pytest-4.6.11 pytest-forked-1.1.3 pytest-timeout-1.3.4 pytest-xdist-1.32.0 python-dateutil-2.8.1 pytz-2020.1 pyvcf-0.6.8 pyyaml-5.3.1 requests-2.23.0 requests-mock-1.8.0 rsa-4.2 tenacity-5.1.5 typing-extensions-3.7.4.2 urllib3-1.25.9 wcwidth-0.2.4 <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:82: UserWarning: You are using Apache Beam with Python 2. New releases of Apache Beam will soon support Python 3 only. 'You are using Apache Beam with Python 2. ' Traceback (most recent call last): File "/usr/lib/python2.7/runpy.py", line 163, in _run_module_as_main mod_name, _Error) File "/usr/lib/python2.7/runpy.py", line 102, in _get_module_details loader = get_loader(mod_name) File "/usr/lib/python2.7/pkgutil.py", line 464, in get_loader return find_loader(fullname) File "/usr/lib/python2.7/pkgutil.py", line 474, in find_loader for importer in iter_importers(fullname): File "/usr/lib/python2.7/pkgutil.py", line 430, in iter_importers __import__(pkg) File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py";,> line 96, in <module> from apache_beam import io File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/__init__.py";,> line 38, in <module> from apache_beam.io.gcp.bigquery import * File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/gcp/bigquery.py";,> line 256, in <module> from apache_beam.io.gcp import bigquery_tools File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/gcp/bigquery_tools.py";,> line 49, in <module> from apache_beam.internal.gcp import auth File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/internal/gcp/auth.py";,> line 28, in <module> from oauth2client.client import GoogleCredentials File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/local/lib/python2.7/site-packages/oauth2client/client.py";,> line 47, in <module> from oauth2client import crypt File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/local/lib/python2.7/site-packages/oauth2client/crypt.py";,> line 23, in <module> from oauth2client import _pure_python_crypt File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/local/lib/python2.7/site-packages/oauth2client/_pure_python_crypt.py";,> line 26, in <module> import rsa File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/local/lib/python2.7/site-packages/rsa/__init__.py";,> line 24, in <module> from rsa.key import newkeys, PrivateKey, PublicKey File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/local/lib/python2.7/site-packages/rsa/key.py";,> line 1 SyntaxError: Non-ASCII character '\xc3' in file <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/local/lib/python2.7/site-packages/rsa/key.py> on line 1, but no encoding declared; see http://python.org/dev/peps/pep-0263/ for details > Task :sdks:python:test-suites:direct:py2:mongodbioIT FAILED > Task :sdks:python:test-suites:direct:py35:mongodbioIT Using default tag: latest latest: Pulling from library/mongo Digest: sha256:d080599e887a18a67b09dbcda4af227b6d2d9a7c4fc5602c25208fba749a8cf2 Status: Image is up to date for mongo:latest ab4cf995f24335c364f04d44ab9d26869341ebb9cb5cb4ea81eb08844bc6eb8f Obtaining file://<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python> Processing /home/jenkins/.cache/pip/wheels/50/24/4d/4580ca4a299f1ad6fd63443e6e584cb21e9a07988e4aa8daac/crcmod-1.7-cp35-cp35m-linux_x86_64.whl Processing /home/jenkins/.cache/pip/wheels/34/63/8b/137c251bca70f301c47a62dae335f36c21a8b86e42c803129a/dill-0.3.1.1-py3-none-any.whl Collecting fastavro<0.24,>=0.21.4 Using cached fastavro-0.23.4-cp35-cp35m-manylinux2010_x86_64.whl (1.3 MB) Requirement already satisfied: future<1.0.0,>=0.18.2 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from 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pytest-timeout, apache-beam Running setup.py develop for apache-beam Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-19.3.0 avro-python3-1.9.2.1 certifi-2020.4.5.2 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.4 freezegun-0.3.15 hdfs-2.5.8 httplib2-0.17.4 idna-2.9 mock-2.0.0 more-itertools-8.3.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.18.5 oauth2client-3.0.0 packaging-20.4 pandas-0.24.2 parameterized-0.7.4 pathlib2-2.3.5 pbr-5.4.5 pyarrow-0.17.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.10.1 pyparsing-2.4.7 pytest-4.6.11 pytest-forked-1.1.3 pytest-timeout-1.3.4 pytest-xdist-1.32.0 python-dateutil-2.8.1 pytz-2020.1 pyyaml-5.3.1 requests-2.23.0 requests-mock-1.8.0 rsa-4.2 tenacity-5.1.5 typing-3.7.4.1 typing-extensions-3.7.4.2 urllib3-1.25.9 wcwidth-0.2.4 INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner. INFO:__main__:Writing 100000 documents to mongodb <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82: FutureWarning: WriteToMongoDB is experimental. known_args.batch_size)) INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7fb689cbd598> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7fb689cbd6a8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7fb689cbd730> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7fb689cbd7b8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7fb689cbd840> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7fb689cbd950> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7fb689cbd9d8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7fb689cbda60> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7fb689cbdae8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7fb689cbdd08> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7fb689cbdc80> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7fb689cbdd90> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7fb689c84a90> for environment urn: "beam:env:embedded_python:v1" INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (((ref_AppliedPTransform_Create/Impulse_3)+(ref_AppliedPTransform_Create/FlatMap(<lambda at core.py:2623>)_4))+((ref_AppliedPTransform_Create/Map(decode)_6)+(ref_AppliedPTransform_Create documents_7)))+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write)))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_15)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_16)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_17))) INFO:__main__:Writing 100000 documents to mongodb finished in 29.049 seconds INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner. INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1591978367 <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101: FutureWarning: ReadFromMongoDB is experimental. | 'Combine' >> beam.CombineGlobally(sum)) INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7fb689cbd598> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7fb689cbd6a8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7fb689cbd730> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7fb689cbd7b8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7fb689cbd840> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7fb689cbd950> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7fb689cbd9d8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7fb689cbda60> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7fb689cbdae8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7fb689cbdd08> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7fb689cbdc80> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7fb689cbdd90> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7fb685315978> for environment urn: "beam:env:embedded_python:v1" INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction))+(ref_PCollection_PCollection_1_split/Write)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (((ref_PCollection_PCollection_1_split/Read)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process))+((ref_AppliedPTransform_Map_7)+(ref_AppliedPTransform_Combine/KeyWithVoid_9)))+((Combine/CombinePerKey/Precombine)+(Combine/CombinePerKey/Group/Write)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (Combine/CombinePerKey/Group/Read)+(((Combine/CombinePerKey/Merge)+(Combine/CombinePerKey/ExtractOutputs))+((ref_AppliedPTransform_Combine/UnKey_14)+(ref_PCollection_PCollection_7/Write))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_Combine/DoOnce/Impulse_16)+(((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda at core.py:2623>)_17)+(ref_AppliedPTransform_Combine/DoOnce/Map(decode)_19))+((((ref_AppliedPTransform_Combine/InjectDefault_20)+(ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_27))+(ref_AppliedPTransform_assert_that/ToVoidKey_28))+(((ref_AppliedPTransform_assert_that/Group/pair_with_1_31)+(assert_that/Group/Flatten/Transcode/1))+(assert_that/Group/Flatten/Write/1)))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((((ref_AppliedPTransform_assert_that/Create/Impulse_23)+(ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda at core.py:2623>)_24))+(ref_AppliedPTransform_assert_that/Create/Map(decode)_26))+(ref_AppliedPTransform_assert_that/Group/pair_with_0_30))+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (((assert_that/Group/GroupByKey/Read)+(ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_34))+(ref_AppliedPTransform_assert_that/Unkey_35))+(ref_AppliedPTransform_assert_that/Match_36) INFO:__main__:Read 100000 documents from mongodb finished in 3.865 seconds mongoioit27371 mongoioit27371 FAILURE: Build failed with an exception. * Where: Build file '<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py2/build.gradle'> line: 108 * What went wrong: Execution failed for task ':sdks:python:test-suites:direct:py2:mongodbioIT'. > Process 'command 'sh'' finished with non-zero exit value 1 * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings BUILD FAILED in 1m 31s 4 actionable tasks: 4 executed Publishing build scan... https://gradle.com/s/owkulyizdthdc Build step 'Invoke Gradle script' changed build result to FAILURE Build step 'Invoke Gradle script' marked build as failure --------------------------------------------------------------------- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
