See <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/3391/display/redirect?page=changes>
Changes: [noreply] Support updating from a job in DRAINING state ------------------------------------------ [...truncated 22.81 KB...] Collecting execnet>=1.1 Using cached execnet-1.7.1-py2.py3-none-any.whl (39 kB) Collecting pytest-forked Using cached pytest_forked-1.3.0-py2.py3-none-any.whl (4.7 kB) Collecting deprecation Using cached deprecation-2.1.0-py2.py3-none-any.whl (11 kB) Collecting crayons Using cached crayons-0.4.0-py2.py3-none-any.whl (4.6 kB) Processing /home/jenkins/.cache/pip/wheels/b8/2d/88/2fb764a7404287819251978fbfe4cacf9b4d8a1d41fce5dd97/wrapt-1.12.1-cp35-cp35m-linux_x86_64.whl Collecting docker Using cached docker-4.3.1-py2.py3-none-any.whl (145 kB) Processing /home/jenkins/.cache/pip/wheels/12/30/01/9ad692eda25f892c00d53d955f3f0b06c3c7cc3e1cb601cb20/blindspin-2.0.1-py3-none-any.whl Requirement already satisfied: zipp>=0.5 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (1.2.0) Collecting apipkg>=1.4 Using cached apipkg-1.5-py2.py3-none-any.whl (4.9 kB) Collecting colorama Using cached colorama-0.4.3-py2.py3-none-any.whl (15 kB) Collecting websocket-client>=0.32.0 Using cached websocket_client-0.57.0-py2.py3-none-any.whl (200 kB) Installing collected packages: crcmod, dill, pytz, fastavro, chardet, idna, urllib3, certifi, requests, docopt, hdfs, httplib2, pbr, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot, python-dateutil, typing-extensions, typing, avro-python3, pyarrow, freezegun, nose, nose-xunitmp, parameterized, pyhamcrest, pyyaml, requests-mock, tenacity, packaging, wcwidth, pathlib2, more-itertools, attrs, atomicwrites, pytest, apipkg, execnet, pytest-forked, pytest-xdist, pytest-timeout, sqlalchemy, psycopg2-binary, deprecation, colorama, crayons, wrapt, websocket-client, docker, blindspin, testcontainers, pandas, apache-beam > Task :sdks:python:test-suites:direct:py2:mongodbioIT Using default tag: latest latest: Pulling from library/mongo Digest: sha256:df9eca84736a666d5f7e7a09aeb8a6d8d073698d5b7349400f10ee75812e0e95 Status: Image is up to date for mongo:latest 93716f09b4e07c2a33c015e98115a5c0823d8ccb84245291e6ffe9932df0918f DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality. 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python_version < "3.6" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (2.3.5) Requirement already satisfied: importlib-metadata>=0.12; python_version < "3.8" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (1.7.0) Collecting pytest-forked Using cached pytest_forked-1.3.0-py2.py3-none-any.whl (4.7 kB) Collecting execnet>=1.1 Using cached execnet-1.7.1-py2.py3-none-any.whl (39 kB) Collecting backports.functools-lru-cache>=1.2.1; python_version < "3.2" Using cached backports.functools_lru_cache-1.6.1-py2.py3-none-any.whl (5.7 kB) Requirement already satisfied: scandir; python_version < "3.5" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from pathlib2>=2.2.0; python_version < "3.6"->pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (1.10.0) Requirement already satisfied: contextlib2; python_version < "3" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (0.6.0.post1) Requirement already satisfied: zipp>=0.5 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (1.2.0) Requirement already satisfied: configparser>=3.5; python_version < "3" in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/lib/python2.7/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (4.0.2) Collecting apipkg>=1.4 Using cached apipkg-1.5-py2.py3-none-any.whl (4.9 kB) Installing collected packages: crcmod, dill, pytz, fastavro, docopt, certifi, urllib3, idna, chardet, requests, hdfs, httplib2, pbr, funcsigs, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot, python-dateutil, typing-extensions, avro, pyvcf, pyarrow, freezegun, nose, nose-xunitmp, parameterized, pyhamcrest, pyyaml, requests-mock, monotonic, tenacity, atomicwrites, packaging, more-itertools, attrs, backports.functools-lru-cache, wcwidth, pytest, pytest-forked, apipkg, execnet, pytest-xdist, pytest-timeout, pandas, apache-beam Running setup.py develop for apache-beam > Task :sdks:python:test-suites:direct:py35:mongodbioIT FAILED Running setup.py develop for apache-beam Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-20.2.0 avro-python3-1.9.2.1 blindspin-2.0.1 certifi-2020.6.20 chardet-3.0.4 colorama-0.4.3 crayons-0.4.0 crcmod-1.7 deprecation-2.1.0 dill-0.3.1.1 docker-4.3.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.6 freezegun-1.0.0 hdfs-2.5.8 httplib2-0.17.4 idna-2.10 mock-2.0.0 more-itertools-8.5.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.18.5 oauth2client-3.0.0 packaging-20.4 pandas-0.24.2 parameterized-0.7.4 pathlib2-2.3.5 pbr-5.5.0 psycopg2-binary-2.8.6 pyarrow-0.17.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.11.0 pyparsing-2.4.7 pytest-4.6.11 pytest-forked-1.3.0 pytest-timeout-1.4.2 pytest-xdist-1.34.0 python-dateutil-2.8.1 pytz-2020.1 pyyaml-5.3.1 requests-2.24.0 requests-mock-1.8.0 rsa-4.6 sqlalchemy-1.3.19 tenacity-5.1.5 testcontainers-3.1.0 typing-3.7.4.3 typing-extensions-3.7.4.3 urllib3-1.25.10 wcwidth-0.2.5 websocket-client-0.57.0 wrapt-1.12.1 <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:86: UserWarning: You are using the final Apache Beam release with Python 3.5 support. New releases of Apache Beam will require Python 3.6 or a newer version. 'You are using the final Apache Beam release with Python 3.5 support. ' Traceback (most recent call last): File "/usr/lib/python3.5/runpy.py", line 174, in _run_module_as_main mod_name, mod_spec, code = _get_module_details(mod_name, _Error) File "/usr/lib/python3.5/runpy.py", line 109, in _get_module_details __import__(pkg_name) File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py";,> line 104, in <module> from apache_beam import coders File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/coders/__init__.py";,> line 19, in <module> from apache_beam.coders.coders import * File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/coders/coders.py";,> line 46, in <module> from apache_beam.coders import coder_impl File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/coders/coder_impl.py";,> line 61, in <module> from apache_beam.utils import windowed_value File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/utils/windowed_value.py";,> line 40, in <module> from apache_beam.utils.timestamp import MAX_TIMESTAMP File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/utils/timestamp.py";,> line 41, in <module> from apache_beam.portability import common_urns File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/common_urns.py";,> line 24, in <module> from apache_beam.portability.api.beam_runner_api_pb2_urns import BeamConstants File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_urns.py";,> line 2, in <module> from . import metrics_pb2 File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/metrics_pb2.py";,> line 14, in <module> import beam_runner_api_pb2 as beam__runner__api__pb2 ImportError: No module named 'beam_runner_api_pb2' > Task :sdks:python:test-suites:direct:py2:mongodbioIT Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-20.2.0 avro-1.9.2 backports.functools-lru-cache-1.6.1 certifi-2020.6.20 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.6 freezegun-0.3.15 funcsigs-1.0.2 hdfs-2.5.8 httplib2-0.17.4 idna-2.10 mock-2.0.0 monotonic-1.5 more-itertools-5.0.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.16.6 oauth2client-3.0.0 packaging-20.4 pandas-0.24.2 parameterized-0.7.4 pbr-5.5.0 pyarrow-0.16.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.11.0 pyparsing-2.4.7 pytest-4.6.11 pytest-forked-1.3.0 pytest-timeout-1.4.2 pytest-xdist-1.34.0 python-dateutil-2.8.1 pytz-2020.1 pyvcf-0.6.8 pyyaml-5.3.1 requests-2.24.0 requests-mock-1.8.0 rsa-4.0 tenacity-5.1.5 typing-extensions-3.7.4.3 urllib3-1.25.10 wcwidth-0.2.5 <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:82: UserWarning: You are using the final Apache Beam release with Python 2 support. New releases of Apache Beam will require Python 3.6 or a newer version. 'You are using the final Apache Beam release with Python 2 support. ' INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner. INFO:__main__:Writing 100000 documents to mongodb <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82: FutureWarning: WriteToMongoDB is experimental. known_args.batch_size)) INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7f29462bd320> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7f29462bd410> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function pack_combiners at 0x7f29462bd488> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7f29462bd500> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7f29462bd578> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7f29462bd5f0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7f29462bd6e0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7f29462bd758> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7f29462bd7d0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7f29462bd848> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7f29462bda28> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7f29462bd9b0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7f29462bdaa0> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7f29489e01d0> for environment ref_Environment_default_environment_1 (beam:env:embedded_python:v1, '') INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_Create/Impulse_3)+((ref_AppliedPTransform_Create/FlatMap(<lambda at core.py:2905>)_4)+((ref_AppliedPTransform_Create/Map(decode)_6)+((ref_AppliedPTransform_Create documents_7)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write))))))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_15)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_16)))+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_17) INFO:__main__:Writing 100000 documents to mongodb finished in 45.029 seconds INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner. INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1599631309 <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101: FutureWarning: ReadFromMongoDB is experimental. | 'Combine' >> beam.CombineGlobally(sum)) INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7f29462bd320> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7f29462bd410> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function pack_combiners at 0x7f29462bd488> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7f29462bd500> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7f29462bd578> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7f29462bd5f0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7f29462bd6e0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7f29462bd758> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7f29462bd7d0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7f29462bd848> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7f29462bda28> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7f29462bd9b0> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7f29462bdaa0> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7f2940b15e90> for environment ref_Environment_default_environment_1 (beam:env:embedded_python:v1, '') INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_PCollection_PCollection_1_split/Read)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))))+(Combine/CombinePerKey/Group/Write)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_assert_that/Create/Impulse_23)+((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda at core.py:2905>)_24)+((ref_AppliedPTransform_assert_that/Create/Map(decode)_26)+((ref_AppliedPTransform_assert_that/Group/pair_with_0_30)+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0))))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((Combine/CombinePerKey/Group/Read)+(Combine/CombinePerKey/Merge))+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_14)+(ref_PCollection_PCollection_7/Write))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (((ref_AppliedPTransform_Combine/DoOnce/Impulse_16)+((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda at core.py:2905>)_17)+(ref_AppliedPTransform_Combine/DoOnce/Map(decode)_19)))+((ref_AppliedPTransform_Combine/InjectDefault_20)+((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_27)+((ref_AppliedPTransform_assert_that/ToVoidKey_28)+((ref_AppliedPTransform_assert_that/Group/pair_with_1_31)+(assert_that/Group/Flatten/Transcode/1))))))+(assert_that/Group/Flatten/Write/1) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((assert_that/Group/GroupByKey/Read)+(ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_34))+((ref_AppliedPTransform_assert_that/Unkey_35)+(ref_AppliedPTransform_assert_that/Match_36)) INFO:__main__:Read 100000 documents from mongodb finished in 5.659 seconds mongoioit27767 mongoioit27767 FAILURE: Build failed with an exception. * Where: Script '<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/common.gradle'> line: 83 * What went wrong: Execution failed for task ':sdks:python:test-suites:direct:py35:mongodbioIT'. > Process 'command 'sh'' finished with non-zero exit value 1 * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings BUILD FAILED in 2m 17s 4 actionable tasks: 4 executed Publishing build scan... https://gradle.com/s/mduediaojzgps Build step 'Invoke Gradle script' changed build result to FAILURE Build step 'Invoke Gradle script' marked build as failure --------------------------------------------------------------------- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
