See <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/3398/display/redirect?page=changes>
Changes: [Udi Meiri] [BEAM-10701] Fix Python coverage reporting [Kyle Weaver] [BEAM-10762] Fix artifact staging bug in Flink/Spark uber jar runners. ------------------------------------------ [...truncated 12.72 KB...] DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. Collecting tox==3.11.1 Using cached tox-3.11.1-py2.py3-none-any.whl (76 kB) Collecting grpcio-tools==1.30.0 Using cached grpcio_tools-1.30.0-cp35-cp35m-manylinux2010_x86_64.whl (2.5 MB) Processing /home/jenkins/.cache/pip/wheels/c4/f0/ae/d4689c4532d1f111462ed6a884a7767d502e511ee65f0d8e1b/future-0.18.2-py3-none-any.whl Collecting mypy-protobuf==1.18 Using cached mypy_protobuf-1.18-py3-none-any.whl (7.3 kB) Collecting virtualenv>=14.0.0 Using cached virtualenv-20.0.31-py2.py3-none-any.whl (4.9 MB) Collecting pluggy<1,>=0.3.0 Using cached pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting py<2,>=1.4.17 Using cached py-1.9.0-py2.py3-none-any.whl (99 kB) Collecting filelock<4,>=3.0.0 Using cached filelock-3.0.12-py3-none-any.whl (7.6 kB) Requirement already satisfied, skipping upgrade: setuptools>=30.0.0 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from tox==3.11.1) (50.3.0) Collecting six<2,>=1.0.0 Using cached six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting toml>=0.9.4 Using cached toml-0.10.1-py2.py3-none-any.whl (19 kB) Collecting grpcio>=1.30.0 Using cached grpcio-1.32.0-cp35-cp35m-manylinux2014_x86_64.whl (3.7 MB) Collecting protobuf>=3.5.0.post1 Using cached protobuf-3.13.0-cp35-cp35m-manylinux1_x86_64.whl (1.3 MB) Collecting distlib<1,>=0.3.1 Using cached distlib-0.3.1-py2.py3-none-any.whl (335 kB) Collecting importlib-resources>=1.0; python_version < "3.7" Using cached importlib_resources-3.0.0-py2.py3-none-any.whl (23 kB) Collecting appdirs<2,>=1.4.3 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Collecting importlib-metadata<2,>=0.12; python_version < "3.8" Using cached importlib_metadata-1.7.0-py2.py3-none-any.whl (31 kB) Collecting zipp>=0.4; python_version < "3.8" Using cached zipp-1.2.0-py2.py3-none-any.whl (4.8 kB) Installing collected packages: distlib, zipp, importlib-resources, appdirs, filelock, importlib-metadata, six, virtualenv, pluggy, py, toml, tox, grpcio, protobuf, grpcio-tools, future, mypy-protobuf Successfully installed appdirs-1.4.4 distlib-0.3.1 filelock-3.0.12 future-0.18.2 grpcio-1.32.0 grpcio-tools-1.30.0 importlib-metadata-1.7.0 importlib-resources-3.0.0 mypy-protobuf-1.18 pluggy-0.13.1 protobuf-3.13.0 py-1.9.0 six-1.15.0 toml-0.10.1 tox-3.11.1 virtualenv-20.0.31 zipp-1.2.0 > Task :sdks:python:test-suites:direct:py2:mongodbioIT Using default tag: latest latest: Pulling from library/mongo > Task :sdks:python:test-suites:direct:py35:mongodbioIT Using default tag: latest latest: Pulling from library/mongo Digest: sha256:77f3d623d475c56ab43d61864bc3aa610953869724dbbea325989a0718741d1c Status: Image is up to date for mongo:latest e0800c1b424d5abbff4145d6fa81468a0294db9901e62592c152e4ef81704fc5 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. Obtaining file://<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python> Processing /home/jenkins/.cache/pip/wheels/50/24/4d/4580ca4a299f1ad6fd63443e6e584cb21e9a07988e4aa8daac/crcmod-1.7-cp35-cp35m-linux_x86_64.whl Processing /home/jenkins/.cache/pip/wheels/34/63/8b/137c251bca70f301c47a62dae335f36c21a8b86e42c803129a/dill-0.3.1.1-py3-none-any.whl Collecting fastavro<0.24,>=0.21.4 Using cached fastavro-0.23.6-cp35-cp35m-manylinux2010_x86_64.whl (1.3 MB) Requirement already satisfied: future<1.0.0,>=0.18.2 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from apache-beam==2.25.0.dev0) (0.18.2) Requirement already satisfied: grpcio<2,>=1.29.0 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from apache-beam==2.25.0.dev0) (1.32.0) Processing 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(from pytest<5.0,>=4.4.0->apache-beam==2.25.0.dev0) (1.7.0) Collecting attrs>=17.4.0 Using cached attrs-20.2.0-py2.py3-none-any.whl (48 kB) Collecting execnet>=1.1 Using cached execnet-1.7.1-py2.py3-none-any.whl (39 kB) Collecting pytest-forked Using cached pytest_forked-1.3.0-py2.py3-none-any.whl (4.7 kB) Processing /home/jenkins/.cache/pip/wheels/b8/2d/88/2fb764a7404287819251978fbfe4cacf9b4d8a1d41fce5dd97/wrapt-1.12.1-cp35-cp35m-linux_x86_64.whl Collecting docker Using cached docker-4.3.1-py2.py3-none-any.whl (145 kB) Processing /home/jenkins/.cache/pip/wheels/12/30/01/9ad692eda25f892c00d53d955f3f0b06c3c7cc3e1cb601cb20/blindspin-2.0.1-py3-none-any.whl Collecting deprecation Using cached deprecation-2.1.0-py2.py3-none-any.whl (11 kB) Collecting crayons Using cached crayons-0.4.0-py2.py3-none-any.whl (4.6 kB) Requirement already satisfied: zipp>=0.5 in <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> 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pandas, apache-beam Running setup.py develop for apache-beam Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-20.2.0 avro-python3-1.9.2.1 blindspin-2.0.1 certifi-2020.6.20 chardet-3.0.4 colorama-0.4.3 crayons-0.4.0 crcmod-1.7 deprecation-2.1.0 dill-0.3.1.1 docker-4.3.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.6 freezegun-1.0.0 hdfs-2.5.8 httplib2-0.17.4 idna-2.10 mock-2.0.0 more-itertools-8.5.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.18.5 oauth2client-3.0.0 packaging-20.4 pandas-0.24.2 parameterized-0.7.4 pathlib2-2.3.5 pbr-5.5.0 psycopg2-binary-2.8.6 pyarrow-0.17.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.11.0 pyparsing-2.4.7 pytest-4.6.11 pytest-forked-1.3.0 pytest-timeout-1.4.2 pytest-xdist-1.34.0 python-dateutil-2.8.1 pytz-2020.1 pyyaml-5.3.1 requests-2.24.0 requests-mock-1.8.0 rsa-4.6 sqlalchemy-1.3.19 tenacity-5.1.5 testcontainers-3.1.0 typing-3.7.4.3 typing-extensions-3.7.4.3 urllib3-1.25.10 wcwidth-0.2.5 websocket-client-0.57.0 wrapt-1.12.1 <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:86: UserWarning: You are using the final Apache Beam release with Python 3.5 support. New releases of Apache Beam will require Python 3.6 or a newer version. 'You are using the final Apache Beam release with Python 3.5 support. ' INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner. INFO:__main__:Writing 100000 documents to mongodb <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82: FutureWarning: WriteToMongoDB is experimental. known_args.batch_size)) INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7f6c6b5b8598> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7f6c6b5b86a8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function pack_combiners at 0x7f6c6b5b8730> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7f6c6b5b87b8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7f6c6b5b8840> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7f6c6b5b88c8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7f6c6b5b89d8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7f6c6b5b8a60> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7f6c6b5b8ae8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7f6c6b5b8b70> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7f6c6b5b8d90> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7f6c6b5b8d08> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7f6c6b5b8e18> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7f6c6b4767b8> for environment ref_Environment_default_environment_1 (beam:env:embedded_python:v1, b'') INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_AppliedPTransform_Create/Impulse_3)+((ref_AppliedPTransform_Create/FlatMap(<lambda at core.py:2905>)_4)+(ref_AppliedPTransform_Create/Map(decode)_6)))+(((ref_AppliedPTransform_Create documents_7)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)))+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+(((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_15)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_16))+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_17)) INFO:__main__:Writing 100000 documents to mongodb finished in 43.112 seconds INFO:root:Missing pipeline option (runner). 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INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1599782527 <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101: FutureWarning: ReadFromMongoDB is experimental. | 'Combine' >> beam.CombineGlobally(sum)) INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7f6c6b5b8598> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7f6c6b5b86a8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function pack_combiners at 0x7f6c6b5b8730> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7f6c6b5b87b8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7f6c6b5b8840> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7f6c6b5b88c8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7f6c6b5b89d8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7f6c6b5b8a60> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7f6c6b5b8ae8> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7f6c6b5b8b70> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7f6c6b5b8d90> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7f6c6b5b8d08> ==================== INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7f6c6b5b8e18> ==================== INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100 INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7f6c44445358> for environment ref_Environment_default_environment_1 (beam:env:embedded_python:v1, b'') INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (((ref_AppliedPTransform_assert_that/Create/Impulse_23)+(ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda at core.py:2905>)_24))+(ref_AppliedPTransform_assert_that/Create/Map(decode)_26))+(((ref_AppliedPTransform_assert_that/Group/pair_with_0_30)+(assert_that/Group/Flatten/Transcode/0))+(assert_that/Group/Flatten/Write/0)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_PCollection_PCollection_1_split/Read)+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+(ref_AppliedPTransform_Map_7)))+(((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))+(Combine/CombinePerKey/Group/Write)) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((Combine/CombinePerKey/Group/Read)+(Combine/CombinePerKey/Merge))+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_14)+(ref_PCollection_PCollection_7/Write))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_AppliedPTransform_Combine/DoOnce/Impulse_16)+((((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda at core.py:2905>)_17)+(ref_AppliedPTransform_Combine/DoOnce/Map(decode)_19))+(ref_AppliedPTransform_Combine/InjectDefault_20))+(ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_27)))+((ref_AppliedPTransform_assert_that/ToVoidKey_28)+(((ref_AppliedPTransform_assert_that/Group/pair_with_1_31)+(assert_that/Group/Flatten/Transcode/1))+(assert_that/Group/Flatten/Write/1))) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write) INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((assert_that/Group/GroupByKey/Read)+((ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_34)+(ref_AppliedPTransform_assert_that/Unkey_35)))+(ref_AppliedPTransform_assert_that/Match_36) INFO:__main__:Read 100000 documents from mongodb finished in 4.714 seconds mongoioit27125 mongoioit27125 > Task :sdks:python:test-suites:direct:py2:mongodbioIT FAILED Get https://registry-1.docker.io/v2/library/mongo/manifests/sha256:ebd31eaac273a9544a33387aa859b0a8676565340a40fc824fa7bda686f462f1: EOF FAILURE: Build failed with an exception. * Where: Script '<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/common.gradle'> line: 76 * What went wrong: Execution failed for task ':sdks:python:test-suites:direct:py2:mongodbioIT'. > Process 'command 'sh'' finished with non-zero exit value 1 * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/6.6.1/userguide/command_line_interface.html#sec:command_line_warnings BUILD FAILED in 2m 42s 4 actionable tasks: 4 executed Publishing build scan... https://gradle.com/s/rkoqazm5k4cb6 Build step 'Invoke Gradle script' changed build result to FAILURE Build step 'Invoke Gradle script' marked build as failure --------------------------------------------------------------------- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
