well I think the bug is solved, I mark this as fixed.
** Changed in: cairo-dock-core
Status: Incomplete => Fix Released
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alltray doesn't play nice
https://bugs.launchpad.net/bugs/443343
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Dock Team, which is subscribed to Cairo-Dock Core.
Status in Cairo-Dock : Core: Fix Released
Bug description:
When using alltray the application stays in the dock after closed instead of
minimizing to the tray. It seems the dock doesn't respect the dynamic changing
of "show on taskbar" status...
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