for me the same ... it is fixed after:
 sudo dpkg --purge skype
 sudo apt-get install skype:i386

ubuntu 11.10  64 bit

like "Blackbug comment #6
https://bugs.launchpad.net/ubuntu/+source/skype/+bug/892836/comments/6 "

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https://bugs.launchpad.net/bugs/892836

Title:
  In GNOME skype icon missing in notfication area/main panel

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