Hello Kenton, Thank you very much for your explanation.
Regards, Rong From: Kenton Varda <[email protected]> Date: Tuesday, September 24, 2019 at 3:42 PM To: "Yao,Rong" <[email protected]> Cc: "[email protected]" <[email protected]>, "Wu,Xiaogang" <[email protected]> Subject: [EXT] Re: [capnproto] Re: Capnproto 0.7.0 error message WARNING: This email originated from outside of MD Anderson. Please validate the sender's email address before clicking on links or attachments as they may not be safe. Hi Rong, Yes, you can safely ignore this test failure... it is probably happening because you're using a filesystem that doesn't support sparse files, or supports them differently than what the test is looking for. Cap'n Proto doesn't actually need sparse files, but this test is testing some utility code that manipulates sparse files if they are available. We should probably fix this test so that it doesn't fail just because the filesystem doesn't have sparse files. -Kenton On Tue, Sep 24, 2019 at 11:57 AM Yao,Rong <[email protected]<mailto:[email protected]>> wrote: Greetings, Capnproto team, I verified that Mash 2.2 fixed the bug regarding to Cap’n Proto headers not found. I am able to build now. Please ignore my question. Just one minor concern, I don’t think 1 failed capnproto test case matter, right? Regards, Rong From: "Yao,Rong" <[email protected]<mailto:[email protected]>> Date: Monday, September 23, 2019 at 2:35 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Capnproto 0.7.0 error message Greetings, Capnproto team, I try to build software Mash 2.0, capnproto is one of its dependency package. I am building capnproto 0.7.0 on RedHat 7.4. I use gcc/7.1.0, I use prefix to install to a non-standard location. $ ./configure --prefix=/risapps/rhel7/capnproto/0.7.0 The make check has a failure [ris_hpc_apps@r1drpswdev3 capnproto-c++-0.7.0]$ make -j6 check PASS: src/capnp/compiler/capnp-test.sh FAIL: capnp-test …. -- I reviewed test-suite.log, seeing; please attached test-suite.log 725 test(s) passed 1 test(s) failed FAIL capnp-test (exit status: 1) I proceeded with ‘make isntall’, it seems no error message and it generates bin, lib, include directory as expected. However, when I build mash 2.0, I am seeing: checking for capnp/common.h... no configure: error: Cap'n Proto headers not found. A google result finds out this link : https://github.com/marbl/Mash/issues/98 But I am confused about the fix part in the first reply message. May you please provide me some suggestion? Thanks! Rong -------------------------------------------------------------------------- Rong Yao Applications Systems Analyst, IT Operations – HPC team 1MC15.3548 University of Texas M.D. Anderson Cancer Center 7007 Bertner Avenue Houston, Texas 77030-3907 Email: [email protected] | Tel: (713) 563-2687 For assistance: http://hpcrequest The information contained in this e-mail message may be privileged, confidential, and/or protected from disclosure. This e-mail message may contain protected health information (PHI); dissemination of PHI should comply with applicable federal and state laws. If you are not the intended recipient, or an authorized representative of the intended recipient, any further review, disclosure, use, dissemination, distribution, or copying of this message or any attachment (or the information contained therein) is strictly prohibited. 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