Hi Jill,
I found the problem. Caret does not like your palette files because
they do not end with a blank line. If you add a blank line at the end
of each of your palette files, caret will read them without
complaining. I will add this problem to my list of Caret tasks.
If you add a blank line at the end of your palette files and you still
have problems reading them, you can download a newer version of Caret5.
Go to the website "http://brainmap.wustl.edu/pub/john/";. You will
need to use the username "pub" and the password "download" to access
the site. Get the file caret5_linux_exe.tar.gz which contains just the
caret5 executable. Place this file into your caret distribution's
"bin" directory. Rename your existing caret5 to something like
caret5_old so that you can use it if you experience problems with this
new version of caret5. Run the command "tar xvfz
caret5_linux_exe.tar.gz" followed by the command "chmod a+rx caret5".
The next time you start caret5 it will be the new one.
Let me know if this still does not fix the problem.
----------------------------------------------------------
John Harwell
[EMAIL PROTECTED]
314-362-3467
Department of Anatomy and Neurobiology
Washington University School of Medicine
660 S. Euclid Ave. Box 8108
St. Louis, MO 63110 USA
On Mar 1, 2005, at 4:56 PM, Jill Dorflinger wrote:
John,
Well, it does not work on my linux box either. Here are some palette
files. The error is
Error while acessing FILENAME
Premature end of file. Is file damaged?
Thanks,
Jill
Hi Jill,
If you rename the *.pal file to a *.palette file will Caret read it?
If not, send the palette file directly to me so that I can determine
why Caret will not read it. I will then make a newer version of Caret5
available to you.
----------------------------------------------------------
John Harwell
[EMAIL PROTECTED]
314-362-3467
Department of Anatomy and Neurobiology
Washington University School of Medicine
660 S. Euclid Ave. Box 8108
St. Louis, MO 63110 USA
On Mar 1, 2005, at 8:15 AM, Jill Dorflinger wrote:
I just installed version 5.1 of caret on a linux platform. I use
caret
to display group analyses from AFNI, so I make metric files of my AFNI
maps. I also use AFNI's palette (*.pal) files so that the clusters
stay
the same colors across different displays.
The problem is I could not open an AFNI palette file in version 5.1.
The open file dialog looks for a *.palette file and not a *.pal file.
How can I use the palette I create in AFNI with caret? I would like
the
clusters to be the same colors in my pictures from AFNI and my
pictures
from caret.
Thanks,
Jill Dorflinger
_______________________________________________
caret-users mailing list
caret-users@brainvis.wustl.edu
http://pulvinar.wustl.edu/mailman/listinfo/caret-users
------------------------------
_______________________________________________
caret-users mailing list
caret-users@brainvis.wustl.edu
http://pulvinar.wustl.edu/mailman/listinfo/caret-users
End of caret-users Digest, Vol 19, Issue 1
******************************************
<ORMAP5.palette><ORmap-right
-3colors.pal>_______________________________________________
caret-users mailing list
caret-users@brainvis.wustl.edu
http://pulvinar.wustl.edu/mailman/listinfo/caret-users
