Joe,
You can have many topo files loaded at one time, and each coord file
can be associated with its own topo file. If things don't look right,
then use Surface: Topology: Assign Topology to Surface to make sure you
have the desired matchup (e.g., cut topo for FLAT map). I'm guessing
this pairing got out of whack in your data set.
David
On Aug 23, 2005, at 6:21 PM, Joe Munson wrote:
Dr. Van Essen,
Thank you! The bordercolor file seems to be successful. However, I
double-checked my CLOSED and CUT .topo files. They were loaded when I
took the screenshot of the flat surface. I'm resegmenting my volume,
so I don't think it is an issue for me anymore. However, it may be
nice to figure out the cause of it for future reference. I can still
load up the distorted volume if you would like to pursue the problem
further. If it happens again, I'll be in touch.
Thanks again,
Joe
Joseph Munson
Maryland Psychiatric Research Center
Functional Neuroimaging Laboratory
Syshelp
x7105
410-206-5139
[EMAIL PROTECTED] 8/23/2005 6:53 PM >>>
Joe,
If you're doing spherical registration to the PALS atlas, then the
bordercolor file you want should be the following one that can be
downloaded from SumsDB:
ForSPHERICAL.REGISTRATION_Human.Class3.bordercolor
http://sumsdb.wustl.edu:8081/sums/archivelist.do?archive_id=5993911
If that doesn't work, then I'm puzzled. The next step would be to
click on any borders that aren't properly colored, and see what their
name is in the ID window report. Then you can (i) add new border
colors of your own using Layers: Borders: edit border colors; (ii)
change the names of your borders using Layers: Borders: edit border
Attributes; or (iii) email back to us with a more precise articulation
of what the problem is and why the first two options didn't work.
Donna's explanation about the topology file seems likely to be on
target.
David VE
On Aug 23, 2005, at 3:29 PM, Joe Munson wrote:
Donna,
I'm using v5.3. You may be right about deselecting the other .topo
file. I'll double check and get back to you.
I did try to load both of the bordercolor files included in the
PALS-B12 set, but to no avail. Is there one that you use, that you
could send me? I'm working on the right hemisphere (PALS-B12).
Thanks Donna,
Joe
Joseph Munson
Maryland Psychiatric Research Center
Functional Neuroimaging Laboratory
Syshelp
x7105
410-206-5139
[EMAIL PROTECTED] 08/23/05 3:42 PM >>>
Hi Joseph,
Which version of Caret are you running?
Your capture looks like you have only the CLOSED topo file loaded, but
the current version of Caret should have the CUT topo selected by
default. Did you deselect the CUT topo?
I believe the bordercolors used during flattening are generated
automatically, but the ones you use during registration are not. When
drawing registration borders, I always navigate to my atlas target
directory and load the bordercolor file found there.
Donna
On 08/23/2005 02:34 PM, Joe Munson wrote:
To all,
After generating an aligned flat surface (and save), I exit Caret.
When I return, the flat surface appears as it does in the attached
.jpeg file. It seems as if the borders have distorted the image.
Any reason as to why this happens?
Also, when/how is the .bordercolor file created? Is the Draw Border
dialog supposed to prompt me for color selection?
Help!
Joseph Munson
Maryland Psychiatric Research Center
Functional Neuroimaging Laboratory
Syshelp
x7105
410-206-5139
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