Dear Donna, I have uploaded the .spec file containing the "black" inflated, fiducial and spherical left hemisphere datasets. The file is a tar.gz format labelled "fordonna". Thank you again for your help. We are trying to deform the sulcal depth maps of subjects left hemispheres to the PALS atlas. Again, following spherical deformation, the left - but not right - fiducial, inflated and spherical hemispheres appear "black", as shown in the screen captures that are appended in jpg format.
One important point is that when you click on the deformed lateral view, you get a medial view, so something is wrong here. There is a dorsal view of the deformed depth fiducial map; a dorsal view of the deformed sphere, and the medial view of the deformed inflated surface. As you will see, the appended and deformed flat maps look fine. Indeed, only one CLOSED topo file is loaded. The CLOSED topo file is: CLOSED Human.sphere_6.73730.topo The fiducial, inflated and spherical coord files are: deformed_Human.6.L.Fiducial.2006-02-13.64283.coord deformed_Human.6.L.Inflated.2006-02-13.64283.coord deformed_Human.6.L.SPHERE_ALIGN.2006-02-13.64283.coord We have tried troubleshooting this by performing this deform on other subjects left hemispheres, and the results are the same (so it cannot be due to a "bad" subjects dataset. We have also tried this on the right hemisphere using the same target atlas, so the atlas files are not corrupted. Finally, we have tried this on both the Linux and Mac platforms and we get the same results, i.e. "bad" left - but not right - hemisphere images. Best, Jason. ------------------------------------------------------------ Jason D. Connolly, PhD Center for Neural Science, New York University 6 Washington Place Room 875, New York, NY 10003 cell:646.417.2937 lab:212.998.8347 fax:212.995.4562 http://www.psych.nyu.edu/curtislab/people/jasonconnolly.html
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