Rebecca,
Can you upload your volume to http://pulvinar.wustl.edu/cgi-bin/
upload.cgi and we will see what is going on. Please let us know when
you have uploaded your volume and the name of the volume file.
----------------------------------------------------------
John Harwell
[EMAIL PROTECTED]
314-362-3467
Department of Anatomy and Neurobiology
Washington University School of Medicine
660 S. Euclid Ave. Box 8108
St. Louis, MO 63110 USA
On Dec 6, 2006, at 2:48 PM, Rebecca Ebitz wrote:
Hi - I'm having a problem segmenting normalized scans.
I've got a very non-uniform volume (macaque, from a 4.7T w/ 0.5 mm
voxels) and have used AFNI's 3dUniformize to correct these issues.
However, when I try to segment the normalized data in CARET, it
either gives me an error (usually that findBiggestObjectWithinMask
failed in some way) or it simply crashes.
I can run a successful segmentation on the non-uniformized volume,
it just requires a great deal of manual correction. I'm doing the
same processing steps for both the normalized and non-uniform volumes.
Anything I should try here? I've tried to run several different
normalizations and all of them cause segmentation to fail.
Please let me know what other information you need from me on this
one.
-Rebecca
_______________________________
Rebecca A. Ebitz, post-bac IRTA
Laboratory of Brain and Cognition
National Institute of Mental Health
Building 10, Room 4C214
Office: 301.4510.8509
[EMAIL PROTECTED]
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