That does the trick!
Thanks so much for your help John and Donna.
On 22/10/2007, at 11:50 PM, John Harwell wrote:
Alex,
One way to display a metric overlayed over another is to display
the first metric, convert the coloring to RGB Paint, set RGB Paint
as the underlay, and then display the second metric as the Primary
Overlay.
* Display your first metric as desired.
* Select Attributes Menu->Copy Current Coloring to RGB Paint. If
desired, replace "New Column Name" with a more appropriate name.
Press the OK button.
* On the Display Control Dialog's Overlay/Underlay Surface page,
change the Underlay to RGB (you should not notice any change in
surface coloring at this time).
* Display your second metric as the Overlay.
One way to identify areas of overlap is to use Surface Menu->Region
of Interest Operations. This method identifies nodes that are
active in two or more metric columns.
* On the Display Control, set the Metric to display one of your
data columns.
* Select Surface Menu->Region of Interest Operations.
* Set the Selection Method to Nodes WIth Metric. Set the Low and
High threshold to values appropriate for your data. Press the
Select Nodes button. You should see your functional areas colored
green in the Main Window.
* Use the Display Control to display a different metric data column.
* Back on the ROI dialog, adjust the Low and High threshold values
if needed. Change "Normal Selection" to "And Selection
(Intersection)" and press the Select Nodes button. Any nodes that
are selected (green in the main window) overlap between the two
metric columns.
* In the Operate on Selected Nodes section, set the Operation to
Assign Paint Attributes to Selected Nodes. Enter a name for the
Paint Column and a Paint Name. Press the Assign Paint button. Set
the paint color as desired. This paint is used to identify the
overlapping regions.
* Press the Close button on the ROI dialog.
* Set the Paint as the overlay to display the overlapping regions.
-----------------------------------
John Harwell
[EMAIL PROTECTED]
Department of Anatomy and Neurobiology
Washington University School of Medicine
660 S. Euclid Ave Box 8108
Saint Louis, MO 63110
On Oct 20, 2007, at 7:56 PM, Alexander Fornito wrote:
Hi all,
Is there anyway to view more than one functional map (i.e., stat
image) on
the PALS atlas simultaneously?
I have mapped the results of a series of contrasts onto the atlas
and now
have a .metric file with each contrast as a different column.
However, I
only seem to be able to view one contrast at a time.
I can't seem to find any documentation on this.
Ultimately, I would like to overlay two maps simultaneously (each
coloured
using a different palette).
Also, if it is possible to view >1 map at the same time, is there
some
option to colour areas of overlap between the maps differently?
Thanks for your help,
Alex
Alex Fornito
JN Peters Research Fellow
Melbourne Neuropsychiatry Centre
National Neuroscience Facility
The University of Melbourne
Levels 2 & 3, 161 Barry St
Carlton South 3053 Vic Australia
Ph: +61 3 8344 1861
Fax: +61 3 9348 0469
Email: [EMAIL PROTECTED]
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Alex Fornito
JN Peters Research Fellow
Melbourne Neuropsychiatry Centre
Department of Psychiatry
The University of Melbourne
Melbourne Neuropsychiatry Centre
National Neuroscience Facility
Levels 2 & 3, 161 Barry St
Carlton South Vic 3053 Australia
Phone: +61 3 8344 1861
Fax: +61 3 9348 0469
Email: [EMAIL PROTECTED]
www.psychiatry.unimelb.edu.au/mnc
