Instructions on how to use the PALS atlas and how to map functional volumes to the PALS atlas is available at http://brainvis.wustl.edu/wiki/index.php/Caret:Documentation . Download the Caret 5.5 Tutorial - The Basics (including PALS atlas). Section 5.1 contains instructions on how to map a functional volume to the PALS atlas surfaces. The human PALS atlas data set is available at http://sumsdb.wustl.edu/sums/humanpalsmore.do.
I am not familiar with the AAL template. Do you know the stereotaxic space of AAL? Caret currently supports 711-2x, AFNI, FLIRT, MRITOTAL, SPM2, SPM5, SPM95, SPM96, and SPM99. Analyze files (hdr/img) typically lack the stereotaxic coordinate information needed to map the volume to the surface. ----------------------------------- John Harwell j...@brainvis.wustl.edu Department of Anatomy and Neurobiology Washington University School of Medicine 660 S. Euclid Ave Box 8108 Saint Louis, MO 63110 On Mar 26, 2009, at 9:41 PM, Jinhui Wang wrote: > Hi, > will you please give me some help on how to map AAL template (.img > and .hdr; a public and used widely atlas) to PALS surface and > display it. I have referred to some tutorial but don't solve it > yet. Need i create some additional files? > > Sincerely > > -- > Jin-hui Wang > State Key Laboratory of Cognitive Neuroscience and Learning, > Beijing Normal University > Add: No.19 Xinjiekouwai Street, > Beijing, China. 100875 > Tel: +86 10 58802036 > Fax: +86 10 58806154 > E-mail: wjh...@gmail.com > wjh122...@yahoo.com.cn > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
