Hi Donald, You have your pick in /caret_parent_dir/caret/data_files/fmri_mapping_files:
it.wustl.edu 104% grep description *spec | egrep -v '(AFNI|711)' Human.colin.FLIRT_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC Cerebellum (73730) converted from Colin Atlas Human.colin.MRITOTAL_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC Cerebellum (73730) converted from Colin Atlas Human.colin.SPM2.CEREBELLUM.168319.spec:description colin CEREBELLUM (168319 nodes), SPM2 space Human.colin.SPM2_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC Cerebellum (73730) converted from Colin Atlas Human.colin.SPM2.LEFT.71785.spec:description colin LEFT hemisphere (71785 nodes), SPM2 space Human.colin.SPM2.RIGHT.71723.spec:description colin RIGHT hemisphere (71723 nodes), SPM2 space Human.colin.SPM5.CEREBELLUM.168319.spec:description colin CEREBELLUM (168319 nodes), SPM5 space Human.colin.SPM5_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC Cerebellum (73730) converted from Colin Atlas Human.colin.SPM95_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC Cerebellum (73730) converted from Colin Atlas Human.colin.SPM96_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC Cerebellum (73730) converted from Colin Atlas Human.colin.SPM99.CEREBELLUM.168319.spec:description colin CEREBELLUM (168319 nodes), SPM99 space Human.colin.SPM99_fMRI-MAPPER.CEREBELLUM.73730.spec:description PC-CC Cerebellum (73730) converted from Colin Atlas Human.colin.SPM99.LEFT.71785.spec:description colin LEFT hemisphere (71785 nodes), SPM99 space Human.colin.SPM99.RIGHT.71723.spec:description colin RIGHT hemisphere (71723 nodes), SPM99 space Human.PALS_B12.LR.MULTI-FIDUCIAL_FLIRT_fMRI-MAPPER.B1-12.LEFT.73730.spec:description PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), MNI305 (FLIRT) space Human.PALS_B12.LR.MULTI-FIDUCIAL_FLIRT_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description PALS_B12Multi-Fid Map RIGHT hemisphere (73730 nodes), MNI305 (FLIRT) space Human.PALS_B12.LR.MULTI-FIDUCIAL_MRITOTAL_fMRI-MAPPER.B1-12.LEFT.73730.spec:description PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), MRITOTAL space Human.PALS_B12.LR.MULTI-FIDUCIAL_MRITOTAL_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description PALS_B12 Multi-Fid Map RIGHT hemisphere (73730 nodes), MRITOTAL space Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM2_fMRI-MAPPER.B1-12.LEFT.73730.spec:description PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), SPM2 space Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM2_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description PALS_B12 Multi-Fid Map RIGHT hemisphere (73730 nodes), SPM2 space Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM5_fMRI-MAPPER.B1-12.LEFT.73730.spec:description PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), SPM5 space Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM5_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description PALS_B12 Multi-Fid Map RIGHT hemisphere (73730 nodes), SPM5 space Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM99_fMRI-MAPPER.B1-12.LEFT.73730.spec:description PALS_B12 Multi-Fid Map LEFT hemisphere (73730 nodes), SPM99 space Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM99_fMRI-MAPPER.B1-12.RIGHT.73730.spec:description PALS_B12Multi-Fid Map RIGHT hemisphere (73730 nodes), SPM99 space The FLIRT, MRITOTAL, and SPM* "spaces" are all based in some way on MNI152 or MNI305, both of which are in the same "space," the way I look at it. The MRITOTAL one actually uses the MNI305 template, while the others use avg152T1, which is in the same space as MNI305. This page might help: http://brainvis.wustl.edu/help/pals_volume_normalization/ Donna On 05/26/2009 11:44 PM, MCLAREN, Donald wrote: > Is there a PALS or Colin surface that is in MNI space? > > -- > Best Regards, Donald McLaren > ===================== > D.G. McLaren > University of Wisconsin - Madison > Neuroscience Training Program > Office: (608) 265-9672 > Lab: (608) 256-1901 ext 12914 > ===================== > This e-mail contains CONFIDENTIAL INFORMATION which may contain > PROTECTED HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED > and which is intended only for the use of the individual or entity > named above. If the reader of the e-mail is not the intended recipient > or the employee or agent responsible for delivering it to the intended > recipient, you are hereby notified that you are in possession of > confidential and privileged information. Any unauthorized use, > disclosure, copying or the taking of any action in reliance on the > contents of this information is strictly prohibited and may be > unlawful. If you have received this e-mail unintentionally, please > immediately notify the sender via telephone at (608) 265-9672 or email. > ------------------------------------------------------------------------ > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users > _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
