Jidan,

That is way too hard of a question on the Monday morning following a
long weekend. ;-)

See inline replies below.

Donna

On 12/28/2009 02:55 AM, z丹丹 wrote:
> Hi Donna,
>
> I want to ask a question related to the spherical registration. When
> we have the original surface, we need to make it into a sphere to
> register it to a template sphere. After this step, we will get the
> deformed sphere. Do you have any way to make this deformed sphere go
> back into the original surface space?
If you selected a bidirectional deformation (source to target AND target
to source), then you could apply the inverse deformation to the deformed
sphere, but in practice no one ever does this, as far as I know.

The typical reason for deforming in the reverse direction (target to
source) is viewing atlas "goodies" on the individual's surface (e.g.,
visuotopic or orbito-frontal parcellations).

> I mean, after this, I can have one original surface, one deformed
> original surface which is from the deformed shpere, when I superimpose
> them together, we can know which part deformed a lot.
I think viewing the deformation field is probably a better way to do
this. See figure 5 in David Van Essen's PALS paper
(http://brainvis.wustl.edu/resources/-Pals.wcover.pdf), panel C.

This isn't something I do every day, but I think you use File: Open Data
File to open the deform_field file that gets written during
registration. Then look at Toolbar: D/C: Deformation Field to see your
visualization options.
> Is that possible? Or do you just compare the deformation in the
> spherical space?
To be honest, I generally don't look at these deformations. I do sanity
check the registration output, to make sure the deformed fiducials look
reasonable and the depth maps are sane looking. Then I do group
analyses, where depth or coordinate differences are computed and put
through statistical tests.
>
> Thanks a lot.
>
> Jidan
>
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