Jeff Moraino and Alex Converse (University of Wisconsin) are working on porting the paxinos brain regions to the 112RM-SL atlas space.
> I might be biased, but the hope is that the 112RM-SL atlas becomes the > standard space for rhesus macaque imaging studies. It has already been used > in several group studies (search macaque and mclaren on pubmed). The > 112RM-SL is useable is AFNI/FSL/SPM, etc., although there maybe some L/R > flipping issues. > > Other options are F99 (available with CARET), F6 for fasicularis, flat maps > (Flat map areal topography in Macaca mulatta based on combined MRI and > histology. Sultan > F<http://www.ncbi.nlm.nih.gov/pubmed?term=%22Sultan%20F%22%5BAuthor%5D>, > Hamodeh > S<http://www.ncbi.nlm.nih.gov/pubmed?term=%22Hamodeh%20S%22%5BAuthor%5D>, > Murayama > Y<http://www.ncbi.nlm.nih.gov/pubmed?term=%22Murayama%20Y%22%5BAuthor%5D>, > Saleem > KS<http://www.ncbi.nlm.nih.gov/pubmed?term=%22Saleem%20KS%22%5BAuthor%5D>, > Logothetis > N<http://www.ncbi.nlm.nih.gov/pubmed?term=%22Logothetis%20N%22%5BAuthor%5D>), > Japanese Macaque (Quallo et al.), pig-tailed macaque (*Macaca nemestrina*) > (Black et al.). > > I am also working on an automated labeling program to label significant > group clusters as well, this will be based on the work by Jeff and Alex and > the 112RM-SL atlas. > > Let me know if you have any more questions. > > Best Regards, Donald McLaren > ================= > D.G. McLaren, Ph.D. > Postdoctoral Research Fellow, GRECC, Bedford VA > Research Fellow, Department of Neurology, Massachusetts General Hospital > and Harvard Medical School > Office: (773) 406-2464 > ===================== > This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED > HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is > intended only for the use of the individual or entity named above. If the > reader of the e-mail is not the intended recipient or the employee or agent > responsible for delivering it to the intended recipient, you are hereby > notified that you are in possession of confidential and privileged > information. Any unauthorized use, disclosure, copying or the taking of any > action in reliance on the contents of this information is strictly > prohibited and may be unlawful. If you have received this e-mail > unintentionally, please immediately notify the sender via telephone at (773) > 406-2464 or email. > > > On Tue, Nov 16, 2010 at 1:37 AM, liang wang <[email protected]> wrote: > >> Hi, >> >> I am curious whether there is region parcellation or standard atlas for >> macaque brain, such as AAL template in human brain. Also, does caret provide >> a macaque brain image in a standard space, in which we can conduct group >> analysis. If any, hopefully this image could be identified by AFNI/FSL. . >> >> Thanks, >> Liang >> -- >> Liang Wang, PhD >> Neuroscience of Attention and Perception Laboratory >> Princeton Neuroscience Institute >> Princeton University >> Princeton, NJ, 08540 >> >> >> >> _______________________________________________ >> caret-users mailing list >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> >> >
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