What do you mean by the standard space? There are is no the standard space in monkey image community right now.
If you look through the former studies related to monkey image, they usually created study-specific monkey template based on monkey subjects they used. The coordinate of those templates were always registered to one of the following atlas: 1.A Combined MRI and Histology Atlas of the Rhesus Monkey Brain by Kadharbatcha S. Saleem and Nikos K. Logothetis 2.Pimate Brain Maps: Structure of the Macaque Brain (Elsevier, Amsterdam, 2000) 3.The Rhesus Monkey Brain in Stereotaxic Coordinates by Paxinos, Huang, and Toga. (*You can regard one of them as the standard space*) If you don't want to make study-specific monkey template of your own, there are several well-defined template you can use: 1. For Macaca mulatta: http://brainmap.wisc.edu/monkey.html 2. For Macaca fascicularis : http://purl.org/net/kbmd/cyno If your monkey are rhesus macaques, the first template is strongly recommended and it had been registered to Saleem's altas. Right now, I have successfully used this templates to normalize and co-register my monkey fMRI data with FSL. ~~ ~~ For the AAl-like, or Region-labeled atlas, you can find one in the newest version of http://www.nitrc.org/projects/wfu_pickatlas/ A monkey Region-labeled atlas is available in that software, but "its cortical boundaries are non-specific (e.g. prefrontal cortex is treated as one continuous region instead of being split into dorsal, orbital, and ventral components)". For more specific parcellation atlas, our group are gonna make one based on coordinates of Saleem's atlas. Meanwhile, one group of Wisconsin University is making a atlas based on Paxinos's coordinates as far as I know. On Wed, Nov 17, 2010 at 2:00 AM, <[email protected]>wrote: > Send caret-users mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > http://brainvis.wustl.edu/mailman/listinfo/caret-users > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of caret-users digest..." > > > Today's Topics: > > 1. Parcellation for macaque brain (liang wang) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 16 Nov 2010 01:37:03 -0500 > From: liang wang <[email protected]> > Subject: [caret-users] Parcellation for macaque brain > To: "Caret, SureFit, and SuMS software users" > <[email protected]> > Message-ID: > <[email protected]> > Content-Type: text/plain; charset="iso-8859-1" > > Hi, > > I am curious whether there is region parcellation or standard atlas for > macaque brain, such as AAL template in human brain. Also, does caret > provide > a macaque brain image in a standard space, in which we can conduct group > analysis. If any, hopefully this image could be identified by AFNI/FSL. . > > Thanks, > Liang > -- > Liang Wang, PhD > Neuroscience of Attention and Perception Laboratory > Princeton Neuroscience Institute > Princeton University > Princeton, NJ, 08540 > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://brainvis.wustl.edu/pipermail/caret-users/attachments/20101116/7af4aff0/attachment-0001.html > > ------------------------------ > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > End of caret-users Digest, Vol 86, Issue 8 > ****************************************** > -- Best Regards, Liu Ci-Rong ================= Liu Ci-Rong, Ph.D. Candidate, Kunming Institute of Zoology, CAS, Kunming, China Visiting Scholar, Institute of Biophysics, CAS, Beijing, China Visiting Scholar, National Laboratory of Pattern Recognition, CAS, Beijing, China Address: 15 Datun Road, Chaoyang District, Beijing 100101, China Email: [email protected] =====================
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