There probably is more than one way to do this. The way I'm used to batching images is using caret_command -show-scene with some TEMPLATE.scene file that has variable names like FIDUCIAL_FNAME for any files that vary. The palette file will probably remain constant across your subjects, so storing this in your scene and using that template scene is probably the way to go.
For an example of how this works, see http://brainvis.wustl.edu/pub/caret/PALS_B12.LR.zip (login pub, password download) and see how preborder.sh interacts with TEMPLATE.check.*H.scene. (Scroll down to the check scenes near the end.) If this turns out to be far more complicated than what you have been doing, then tell me how you've been doing it. On Sep 22, 2011, at 3:16 AM, Sophie Achard wrote: > > Dear caret users, > > I've found a way to batch caret to be able to export color images using > specific template. My problem now is to specify to caret to use my own > palette. I know how to do this using the GUI, but when I want to batch it, > caret is not able to find my own palette. > > I've tried to add a line in the .spec file, to specify the new palette > file to use, but it seems caret could not read it by default. > > Thanks a lot for your help, > > Sophie. > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
