FSL is another software package for viewing and manipulating MRI images, etc, which is entirely separate from Caret:
http://www.fmrib.ox.ac.uk/fsl/ to3d's help suggests that it should understand .ima, but it doesn't seem to give much detail on how to use it: "* Siemens .ima image files can now be read. The program will detect if byte-swapping is needed on these images, and can also set voxel grid sizes and orientations (correctly, I hope)." Did you try dinifti or dcm2nii? I know at least one of them understood .ima, but I can't remember which. http://cbi.nyu.edu/software/dinifti.php http://www.cabiatl.com/mricro/mricron/dcm2nii.html If all that fails, you may be able to run it through dcm_to_4dfp and nifti_4dfp from the 4dfp suite, but that will probably involve building it from source unless you already have it installed. Tim On Mon, Mar 12, 2012 at 2:01 PM, Maestri, Matthew < [email protected]> wrote: > Hi Tim, > > I was unable to use AFNI's to3d. Is there any way I can convert them in > Caret or compile them somehow? What is a FSL in Caret? > > Thank you, > Matthew > ________________________________________ > From: [email protected] [ > [email protected]] on behalf of Donna Dierker [ > [email protected]] > Sent: Friday, March 09, 2012 12:10 PM > To: Caret, SureFit, and SuMS software users > Subject: Re: [caret-users] ima images > > Try something like AFNI's to3d. > > > On Mar 9, 2012, at 11:04 AM, Timothy Coalson wrote: > > > I believe .ima is an extension used for dicom data, try a dicom to nifti > converter such as dinifti or dcm2nii (part of mricron). > > > > Tim > > > > On Fri, Mar 9, 2012 at 9:09 AM, Maestri, Matthew < > [email protected]> wrote: > > Hi Donna, > > > > Is it possible for me to open ima images in Caret? If not, is it > possible for me to convert the ima images into a Caret friendly image? If > so, how would I got about doing this? > > > > Thanks, > > Matthew > > > > _______________________________________________ > > caret-users mailing list > > [email protected] > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > > > > _______________________________________________ > > caret-users mailing list > > [email protected] > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users >
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