Not really. Caret (and SureFit, from which the segmentation stuff came) just wasn't designed to segment the skull. You can toggle on keep intermediate files and look at the various intermediate volumes to see if you can use one of them as a starting point, but I don't think any of them will work without substantial processing.
There will be many intermediate volumes, so to help narrow your focus, the ones listed at the tail end of SegmentCerebralWhiteMatter are your best bets: http://surefit.cvs.sourceforge.net/viewvc/surefit/SureFitSrc/SureFitPython/Scripts.py?revision=1.13&view=markup I would think something like FSL's bet would be a better bet: http://fsl.fmrib.ox.ac.uk/analysis/research/siena/siena/node4.html It also seems like something in Brian Avants' orbit, but I don't see it here: http://www.picsl.upenn.edu/ANTS/ Above all, don't extract the skull by banging your head on your desk. On Apr 23, 2012, at 11:17 AM, Maestri, Matthew wrote: > Hi Donna, > > Is it at all possible to map a 3d image of the skull using Caret? If so, how > might I go about doing that? Looking forward to your reply. > > Thanks, > Matthew > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
