Hello folks. I need to make a marmoset surface.
with macaque, my preference is to do it at full 250um resolution in freesurfer, so I get the ribbon, WM, pial, and import that dense mesh into CARET. But, it's a nightmare. So I downsample to 500um and use caret surefit since it's far, far, far easier. But caret is designed with monkey in mind, at 500um. what about this marmoset? the res is 150um or any multiple. I know that 250um monkey works in caret, but only if I remove everything pons down, since there's a slice based thing going on there I think to remove that stuff. that makes me suspicious re: the marmoset. does anyone have any adivce on settings for a 150um or multiple marmoset? Should I, e.g. tell caret it's a rodent? Freesurfer might not be so hard for marmoset compared to macaque, since there's no gyration. If Caret is going to be tricksy, maybe my first port of call should be FS, since then I get the WM + ribbon? registration not an issue here of course, we're not doing that. We just want a surface. Fast. best, Colin
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