thanks donna. it's much like the xml labeltable on the caret wiki, but it predates it. you see it all when you open the nifti in emacs. i guess it is a lut by definition.
anyway i was just discussing the matter. I'm told it is "their problem" to sort it out not mine. whoever "they" are, that works for me. best, Colin On 3 July 2013 18:00, <[email protected]> wrote: > Send caret-users mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > http://brainvis.wustl.edu/mailman/listinfo/caret-users > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of caret-users digest..." > > Today's Topics: > > 1. paint vols and afni (Colin Reveley) > 2. Could anybody show me some information about .nv files used > in Caret? (Zhijiang Wang) > 3. Re: paint vols and afni (Donna Dierker) > > > ---------- Forwarded message ---------- > From: Colin Reveley <[email protected]> > To: "[email protected]" <[email protected]> > Cc: > Date: Tue, 2 Jul 2013 18:24:28 +0100 > Subject: [caret-users] paint vols and afni > When one saves a paint volume in caret as a nifti, there are two header > extensions that reflect the value<->name mapping. > > One of these is an afni header extension. It is marked as deprecated. > > But is it something one could actually load in afni itself (obviously the > data can be loaded, but can it be loaded in a way that afni interprets the > header data as an atlas/mapping etc)? > > I'm not familiar with afni at all. But I need to do this one way or > another and simply loading the caret paint volume, or doing something with > it, would be nicer than coding. > > best, > > Colin > > > ---------- Forwarded message ---------- > From: Zhijiang Wang <[email protected]> > To: "[email protected]" <[email protected]> > Cc: > Date: Wed, 3 Jul 2013 17:12:20 +0800 > Subject: [caret-users] Could anybody show me some information about .nv > files used in Caret? > Dear all, > > Could anybody show me some information about .nv files used in Caret? > > I want to read in R. > > Great thanks@!@! > > > Ross > PHD in BJUT > > -- > ** ** ** ** ** ********** > > > ---------- Forwarded message ---------- > From: Donna Dierker <[email protected]> > To: "Caret, SureFit, and SuMS software users" < > [email protected]> > Cc: > Date: Wed, 3 Jul 2013 08:44:13 -0500 > Subject: Re: [caret-users] paint vols and afni > On Jul 2, 2013, at 12:24 PM, Colin Reveley <[email protected]> wrote: > > > When one saves a paint volume in caret as a nifti, there are two header > extensions that reflect the value<->name mapping. > > > > One of these is an afni header extension. It is marked as deprecated. > > Is this the LUT_NAMES, where the ordinal position of the paint name > indicates the associated intensity/label? > > > > But is it something one could actually load in afni itself (obviously > the data can be loaded, but can it be loaded in a way that afni interprets > the header data as an atlas/mapping etc)? > > Don't know, but they must have some means of mapping color to > intensity/label. It might be through a freesurfer-like LUT .txt file. I > think I once found one for the TTatlas that comes with the AFNI > distribution. I'm not sure where I got this: > > http://brainmap.wustl.edu/pub/donna/TTatlas_colors.txt > login pub > password download > > It's worth posting to the AFNI message board ( > http://afni.nimh.nih.gov/afni/community/board) about this. Someone like > Rick Reynolds can probably point you in the right direction. > > > > > I'm not familiar with afni at all. But I need to do this one way or > another and simply loading the caret paint volume, or doing something with > it, would be nicer than coding. > > > > best, > > > > Colin > > _______________________________________________ > > caret-users mailing list > > [email protected] > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > >
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