Hi Open the deformation map in a text editor. There are two directory sources that you have to change them to your current directory. I think it will work.
Best Rouhi On Oct 19, 2013 3:11 AM, "Wang Zhiwei" <[email protected]> wrote: > Hi CARET experts,**** > > ** ** > > I am try to convert Freesurfer labels (lh.MT.label ) to > 164k_fs_LR. The steps are as follows:**** > > ** ** > > **1. **Make a folder named lMT, then copy lh.MT.label to it.**** > > **2. **caret_command -file-convert -fsl2c . > /usr/local/freesurfer/subjects/fsaverage/surf/lh.pial lh.MTp.paint. this > command creat the lh.MTp.paint file.**** > > **3. **caret_command -deformation-map-apply > fsaverage.L.registered-to-fs_LR_fix.164k_fs_LR.deform_map PAINT > lh.MT.paint lh.164k.MT.paint**** > > I got the hint:**** > > “ DEFORMATION MAP APPLY ERROR: Individual directory is invalid. Change the > individual directory to the directory containing the individual spec > file.Atlas directory is invalid. Change the**** > > atlas directory to the directory containing the atlas spec file.”**** > > **** > > what’s the relationship between the command and directory? Could anyone > can tell me how to use the command “-deformation-map-apply” or help me > achieve my goal?**** > > ** ** > > Thanks!**** > > ** ** > > Zhiwei**** > > ** ** > > ** ** > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > >
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