Thanks. Would you tell me where I can get these deformation maps (what's their exact name)? On Nov 7, 2013 10:24 PM, "Matt Glasser" <[email protected]> wrote:
> You need to save the file as a GIFTI .func.gii file. Then you can use the > fsaverage to FS_LR and FS_LR to PALS deformation maps to resample the data > onto the PALS mesh. > > Peace, > > Matt. > > From: SHAHIN NASR <[email protected]> > Reply-To: "Caret, SureFit, and SuMS software users" < > [email protected]> > Date: Thursday, November 7, 2013 7:42 PM > To: <[email protected]> > Subject: [caret-users] mapping fMRI maps generated in freesurfer on > > Hi, > I have generated a group-averaged fmri activity map in freesurfer to > be overlaid on fsaverage (freesurfer brain template). Analysis was in the > surface space (rather than MNI305 space) and output is a sig.nii file. > Now I want to overlay it on the PALS brain template using caret. As > far as I see, this is not supported. When I try to use Attribute>Map > Volumes to surfaces I can load my sig.nii file but when I use "Map to Spec > File with Atlas", there is no fsaverage space and also when I use SPM5 > space instead, registration is off. > Is there any solution? Should I reanalyze my data in MNI305 space? Or > is there anyway to correct the registration? > > -- > Shahin Nasr > > PhD in Cognitive Neuroscience > Martinos Imaging Center, MGH > Harvard Medical School > > _______________________________________________ caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > >
_______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
