Hello, Thanks for your input. I successfully was able to use freesurfer_to_fs_LR Pipeline to import my FreeSurfer files into caret, however when I try running ANOVA, it asks for certain files that have not been generated by the pipeline. Specifically, how do I generate the "distortion-metric-shape-file" that is being asked for? Lastly, is the .topo file that is generated via the pipeline the open topo file or closed? Previously I was able generate the closed topo file, so I'm not sure if the freesurfer_to_fs_LR pipeline does the same. The parameter required for the ANOVA analysis is the open topo file.
Thank you, Eshita Shah On Thu, Nov 7, 2013 at 4:12 PM, Rouhollah Abdollahi <[email protected]>wrote: > Hi > Actually the code import the original data from freesurfer to caret then > automatically you will have different node number for different subjects > and hemispheres. To have the same mesh you can use Freesurfer_to_fs_LR > Pipeline which is available in the caret website. It imports all the data > to the same mesh which here is fs_LR mesh. > Hope it helps > Best > Rouhi > On Nov 8, 2013 12:06 AM, "Eshita Shah" <[email protected]> wrote: > >> Hello, >> >> I have just recently started using Caret, and I am running the >> freesurfer2caret.sh script in order to import my FreeSurfer files into >> Caret as well as generate sulcal depth for all subjects. I tried doing a >> One-Way ANOVA test, but I've realized that the number of nodes in the >> metric/surface_shape files for the two subjects are different. How is it >> possible that the same script is creating files with different node >> numbers? Also, within each subject, sometimes the node numbers for the left >> and right hemisphere are different as well. How can I resolve this issue so >> I can successfully run ANOVA on my subjects? >> >> Any help would be appreciated. >> >> Thank you, >> Eshita Shah >> >> _______________________________________________ >> caret-users mailing list >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> >> > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users >
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