I have a suspicion: Somehow, you could have gotten a link/shortcut/caret5-binary-itself on your desktop or some other location that is displaced from the rest of the caret distribution. (This happened to me recently, which is why it comes to mind.) In order for caret to see the atlas spec files it needs to enable that option, it needs files in $CARET_HOME/data_files/fmri_mapping_files, and it deduces $CARET_HOME as the parent directory of the caret5 binary used to start caret.
Let's hope this sheds some light on your issue. On Nov 28, 2013, at 6:16 AM, Eva Hilland <[email protected]> wrote: > Dear Caret users, > > I am trying to map SPM8 functional data to the Caret template. In the GUI for > Map Volume(s) to Surface(s) > Spec File and Surface Selection - I can only > choose "Map To Spec File", and not the Map To Spec File with Atlas. > > Any idea why this option doesn´t work for me? It worked fine before. > > I am greatful for any tips! > > Best, > Eva > <Screen Shot 2013-11-28 at > 13.02.45.png>_______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
