If you have opted to run the registration both ways (individual to atlas and 
atlas to individual), you should be able to get the atlas goodies on the native 
mesh.  If they were not in the spec file when you ran the registration, then 
you can apply the deformation map in the native directory to the paint file in 
the atlas directory, specifying the output deformed*paint be written in the 
native directory.


On Dec 2, 2013, at 10:06 AM, Konrad Wagstyl <[email protected]> wrote:

> Hi,
> 
> I've registered Macaque data using the FS to F99 tutorial in order to use the 
> parcellation schemes.
> I understand this resamples the subject's surface giving a different number 
> and spacing of vertices.
> Is it possible to generate a file with the native space vertices and the 
> atlas region in which each vertex lies?
> 
> I have data values for these individual vertices that I would like to compare 
> based on their anatomical region.
> 
> Thanks,
> Konrad
> 
> 
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