You could do that, but assuming the myelin mapping results output individual myelin maps on the 164k_fs_LR standard mesh (or 32k), then you could actually look at them on the Conte69 atlas (e.g., inflated surface). You could have multiple subjects' maps loaded and toggle from one to the other.
But if you want to click on the maps and "ID node" spots on the midthickness surface, for example, so you could see what the individual anatomy looks like, and how its contours overlay on the T1/T2, then you're better off using an individual spec file. To be honest, I'm not familiar with myelin mapping yet, but I am trying to learn more about it. Assuming you are on a Linux or MacOSX machine, could you do this command: find /directory/where/my/myelin/mapping/results/are/located | sort > /tmp/myelinoutputfiles.txt … then upload the resulting /tmp/myelinoutputfiles.txt here: http://pulvinar.wustl.edu/cgi-bin/upload.cgi I'm wondering if spec or scene files already exist, and want to rule it out before you generate your own. On Jan 29, 2014, at 2:59 PM, "Cheng, Hu" <[email protected]> wrote: > Hi Donna, > > I followed the procedures in Myelin_Mapping_Documentation_v2.doc and finished > processing my own data. I just wonder how to display the results just as > viewing conte69 results. Should I copy their spec file and replace all the > files? > Thank you very much! > > Regards, > > Hu > > > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Donna Dierker > Sent: Monday, January 20, 2014 6:18 PM > To: Caret, SureFit, and SuMS software users > Subject: Re: [caret-users] only got one hemisphere from surefit > > SureFit only segments one hemisphere at a time. You need to crop to a left > or right hemisphere and run them separately. > > > On Jan 20, 2014, at 3:36 PM, "Cheng, Hu" <[email protected]> wrote: > >> Dear Caret User, >> >> I'm running Caret on a 64-bit Windows. I tried to segment an individual's >> T1w anatomy using surefit. I set the origin at AC and select "both" in >> structure. However, I only got left hemisphere segmented. The inflated >> surface is only half of the brain. What did I do wrong? >> Thanks for your help! >> >> Hu Cheng, Ph.D., DABMP >> MRI Physicist, Imaging Research Facility Department of Psychological >> and Brain Sciences Indiana University Bloomington, IN 47405 Tel. >> 812-856-2518 Fax. 812-855-4691 >> >> _______________________________________________ >> caret-users mailing list >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
