Daniel, The only ways I know to do are:
* If your volume is already p-values, map it, but then use Attributes: Metric to compute q=1-p and threshold q. * If your volume is t, f, etc. then using some external software/table compute the t/f corresponding to p=.05, and threshold at that level. Toggle on display color bar, and you will need to photoshop in p<.05 in lieu of the q/t/f. Donna On Apr 8, 2014, at 2:28 PM, "Yang, Daniel" <yung-jui.y...@yale.edu> wrote: > Hi Donna, > > Thank you so much! That helps a lot! By the way, do you know how I can add a > p-value bar in the surface mapping with metric? > > I want to show something like p < .05 ~ .0001 for example. > > Thanks! > Daniel > > -- > Daniel (Yung-Jui) Yang, Ph.D. > Postdoctoral Researcher > Yale Child Study Center > New Haven, CT > Tel: (203) 737-5454 > E-mail: yung-jui.y...@yale.edu > > On 4/8/14 2:19 PM, "Donna Dierker" <do...@brainvis.wustl.edu> wrote: > > Hi Daniel, > > The palette isn't used in the mapping step (caret_command > -volume-map-to-surface or -volume-map-to-surface-pals). Rather, it is used > when visualizing the results of mapping (output metric), either interactively > in caret5 or using a ready-made scene or caret_command -show-scene. The > palette can be set on the Metric Settings menu. There is a drop-down menu, > or you can make your own palette > (http://brainvis.wustl.edu/CaretHelpAccount/caret5_help/file_formats/file_formats.html#paletteFile). > > Donna > > On Apr 8, 2014, at 11:12 AM, "Yang, Daniel" <yung-jui.y...@yale.edu> wrote: > > Hi Caret Experts and Users, > I want to change the palette in mapping volume to surface pals. Do you know > how I can do that using caret_command? > Thanks! > Daniel > -- > Daniel (Yung-Jui) Yang, Ph.D. > Postdoctoral Researcher > Yale Child Study Center > New Haven, CT > Tel: (203) 737-5454 > E-mail: yung-jui.y...@yale.edu > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
