Thanks, that worked!  Once I figured out there was a default
deployerConfigContext.xml created by the overlay I edited that and got
myself up and running using the following.  I still have some
customisations to make but I can login from the db now!  Thanks to you both
for you help!  Free beer for all!

<?xml version="1.0" encoding="UTF-8"?>

<beans xmlns="http://www.springframework.org/schema/beans";
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
       xmlns:context="http://www.springframework.org/schema/context";
       xmlns:p="http://www.springframework.org/schema/p";
       xmlns:c="http://www.springframework.org/schema/c";
       xmlns:aop="http://www.springframework.org/schema/aop";
       xmlns:tx="http://www.springframework.org/schema/tx";
       xmlns:util="http://www.springframework.org/schema/util";
       xmlns:sec="http://www.springframework.org/schema/security";
       xsi:schemaLocation="http://www.springframework.org/schema/beans
http://www.springframework.org/schema/beans/spring-beans.xsd
       http://www.springframework.org/schema/tx
http://www.springframework.org/schema/tx/spring-tx.xsd
       http://www.springframework.org/schema/aop
http://www.springframework.org/schema/aop/spring-aop.xsd
       http://www.springframework.org/schema/context
http://www.springframework.org/schema/context/spring-context.xsd
       http://www.springframework.org/schema/security
http://www.springframework.org/schema/security/spring-security.xsd
       http://www.springframework.org/schema/util
http://www.springframework.org/schema/util/spring-util.xsd";>
    <description>
        Nothing yet - work in progress
    </description>

    <!-- Copied from
https://github.com/apereo/cas/blob/4.2.x/cas-server-webapp/src/main/webapp/WEB-INF/deployerConfigContext.xml
-->
    <util:map id="authenticationHandlersResolvers">
        <!--
https://apereo.github.io/cas/4.2.x/installation/Configuring-Principal-Resolution.html#principalresolver-vs-authenticationhandler
we want to use the -->
        <!-- we want to use the value returned from
queryDatabaseAuthenticationHandler -->
        <entry key-ref="primaryAuthenticationHandler" value="#{null}"/>
    </util:map>




    <!--
https://apereo.github.io/cas/4.2.x/installation/Configuring-Authentication-Components.html#default-encoder
-->
    <alias name="defaultPasswordEncoder" alias="passwordEncoder"/>

    <!--
https://apereo.github.io/cas/4.2.x/installation/Database-Authentication.html
-->
    <alias name="queryDatabaseAuthenticationHandler"
alias="primaryAuthenticationHandler"/>
    <alias name="dataSource" alias="queryDatabaseDataSource"/>
    <bean id="dataSource"
          class="com.mchange.v2.c3p0.ComboPooledDataSource"
          p:driverClass="${database.driverClass}"
          p:jdbcUrl="${database.url}"
          p:user="${database.user}"
          p:password="${database.password}"
          p:initialPoolSize="${database.pool.minSize}"
          p:minPoolSize="${database.pool.minSize}"
          p:maxPoolSize="${database.pool.maxSize}"
          p:maxIdleTimeExcessConnections="${database.pool.maxIdleTime}"
          p:checkoutTimeout="${database.pool.maxWait}"
          p:acquireIncrement="${database.pool.acquireIncrement}"
          p:acquireRetryAttempts="${database.pool.acquireRetryAttempts}"
          p:acquireRetryDelay="${database.pool.acquireRetryDelay}"

p:idleConnectionTestPeriod="${database.pool.idleConnectionTestPeriod}"
          p:preferredTestQuery="${database.pool.connectionHealthQuery}"/>


    <!-- Copied from
https://github.com/apereo/cas/blob/4.2.x/cas-server-webapp/src/main/webapp/WEB-INF/deployerConfigContext.xml
 START-->

    <util:list id="authenticationMetadataPopulators">
        <ref bean="successfulHandlerMetaDataPopulator" />
        <ref bean="rememberMeAuthenticationMetaDataPopulator" />
    </util:list>

    <bean id="attributeRepository"
class="org.jasig.services.persondir.support.NamedStubPersonAttributeDao"
          p:backingMap-ref="attrRepoBackingMap" />

    <util:map id="attrRepoBackingMap">
        <entry key="uid" value="uid" />
        <entry key="eduPersonAffiliation" value="eduPersonAffiliation" />
        <entry key="groupMembership" value="groupMembership" />
        <entry>
            <key><value>memberOf</value></key>
            <list>
                <value>faculty</value>
                <value>staff</value>
                <value>org</value>
            </list>
        </entry>
    </util:map>

    <alias name="ticketGrantingTicketExpirationPolicy"
alias="grantingTicketExpirationPolicy" />
    <alias name="multiTimeUseOrTimeoutExpirationPolicy"
alias="serviceTicketExpirationPolicy" />

    <bean id="auditTrailManager"

class="org.jasig.inspektr.audit.support.Slf4jLoggingAuditTrailManager"
          p:entrySeparator="${cas.audit.singleline.separator:|}"
          p:useSingleLine="${cas.audit.singleline:false}"/>

    <alias name="neverThrottle" alias="authenticationThrottle" />

    <util:list id="monitorsList">
        <ref bean="memoryMonitor" />
        <ref bean="sessionMonitor" />
    </util:list>

    <alias name="anyAuthenticationPolicy" alias="authenticationPolicy"/>
    <alias name="acceptAnyAuthenticationPolicyFactory"
alias="authenticationPolicyFactory"/>

    <alias name="serviceThemeResolver" alias="themeResolver"/>

    <alias name="defaultTicketRegistry" alias="ticketRegistry"/>

    <alias name="defaultPrincipalFactory" alias="principalFactory"/>

    <alias name="defaultAuthenticationTransactionManager"
alias="authenticationTransactionManager"/>
    <alias name="defaultPrincipalElectionStrategy"
alias="principalElectionStrategy"/>
    <alias name="tgcCipherExecutor" alias="defaultCookieCipherExecutor"/>
    <alias name="neverThrottle" alias="authenticationThrottle" />

    <!-- Copied from
https://github.com/apereo/cas/blob/4.2.x/cas-server-webapp/src/main/webapp/WEB-INF/deployerConfigContext.xml
 END-->


</beans>




On Fri, 3 Jun 2016 at 16:56 John Rellis <[email protected]> wrote:

> Excellent, thank you!
>
> On Fri, 3 Jun 2016 at 16:55 Dmitriy Kopylenko <[email protected]>
> wrote:
>
>> Just leave the propertyFileConfigurer.xml alone and customize the
>> deployerConfigContext.xml in your overlay.
>>
>> And check this doc out:
>> http://apereo.github.io/cas/4.2.x/installation/Maven-Overlay-Installation.html
>>
>> D.
>>
>> On Jun 3, 2016, at 11:50 AM, John Rellis <[email protected]> wrote:
>>
>> Thanks Dmitriy,
>>
>> Are you saying that I need to move propertyFileConfigurer.xml from where
>> the cas-overlay-template mvn pakage puts it?
>>
>> I'll try customising what Misagh linked to, thanks to you both.
>> Hopefully I won't have to come back with more questions.
>>
>> Thanks,
>> John
>>
>> On Fri, 3 Jun 2016 at 16:40 Dmitriy Kopylenko <[email protected]>
>> wrote:
>>
>>> Place the custom handler definitions and aliases into
>>> WEB-INF/deployerConfigContext.xml As Misagh showed in that link in the
>>> previous message. Just get the entire file from the CAS repository, place
>>> it in your overlay and override the custom bits.
>>>
>>> Just an aside note - that kind of local customization will be much
>>> easier in CAS v5 ;-)
>>>
>>> Cheers,
>>> D.
>>>
>>> On Jun 3, 2016, at 11:35 AM, John Rellis <[email protected]>
>>> wrote:
>>>
>>> Hi Dimitry,
>>>
>>> I am using https://github.com/apereo/cas-overlay-template to create a
>>> war and yes propertyFileDescriptor.xml is where I have copied that xml
>>> from.
>>>
>>> Once deployed it is in
>>> apache-tomcat-8.0.33/webapps/cas/WEB-INF/spring-configuration/
>>> propertyFileConfigurer.xml
>>>
>>> Do you need any more info?
>>>
>>> Thanks!
>>> John
>>>
>>> On Fri, 3 Jun 2016 at 16:26 Dmitriy Kopylenko <[email protected]>
>>> wrote:
>>>
>>>> You mentioned ‘propertyFileDescriptor.xml’. Is that where you define
>>>> your beans shown below? Where do you place this file?
>>>>
>>>> D.
>>>>
>>>> On Jun 3, 2016, at 11:21 AM, John Rellis <[email protected]>
>>>> wrote:
>>>>
>>>> Thanks but that doesn't use queryDatabaseAuthenticationHandler :(
>>>>
>>>> On Friday, 3 June 2016 16:11:23 UTC+1, Misagh Moayyed wrote:
>>>>>
>>>>> Compare your configuration with this:
>>>>>
>>>>>
>>>>> https://github.com/apereo/cas/blob/4.2.x/cas-server-webapp/src/main/webapp/WEB-INF/deployerConfigContext.xml
>>>>>
>>>>>
>>>>> *From:* [email protected] [mailto:[email protected]] *On Behalf Of *John
>>>>> Rellis
>>>>> *Sent:* Friday, June 3, 2016 7:10 AM
>>>>> *To:* CAS Community <[email protected]>
>>>>> *Subject:* [cas-user] queryDatabaseAuthenticationHandler not being
>>>>> called (CAS 4.2.2)
>>>>>
>>>>>
>>>>> Hello!
>>>>>
>>>>>
>>>>> CAS version 4.2.2
>>>>>
>>>>>
>>>>> I am following the documentation to try and configure a database
>>>>> authentication hander but it looks as though the
>>>>> AcceptUsersAuthenticationHandler is the only one being called (logs below)
>>>>>
>>>>>
>>>>> Here's my propertyFileDescriptor.xml.  I've been looking at examples
>>>>> online that actually define beans for queryDatabaseAuthenticationHandler
>>>>> but since this is not in the docs I am assuming this done on older 
>>>>> versions
>>>>> (apologies, I've mainly been working in grails so my spring config
>>>>> experience is non-existent).  Thanks in advance for any pointers here, I
>>>>> feel like I've hit a wall with the docs.
>>>>>
>>>>>
>>>>> I have also set these :
>>>>>
>>>>>
>>>>> cas.authn.password.encoding.char=UTF-8
>>>>>
>>>>> cas.authn.password.encoding.alg=SHA-256
>>>>>
>>>>> cas.jdbc.authn.query.sql=select password_hash from shiro_user where
>>>>> username = ?
>>>>>
>>>>>
>>>>>
>>>>> <beans xmlns="http://www.springframework.org/schema/beans";
>>>>>
>>>>>        xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
>>>>>
>>>>>        xmlns:p="http://www.springframework.org/schema/p";
>>>>>
>>>>>        xmlns:context="http://www.springframework.org/schema/context";
>>>>>
>>>>>        xmlns:util="http://www.springframework.org/schema/util";
>>>>>
>>>>>        xsi:schemaLocation="http://www.springframework.org/schema/beans
>>>>>  http://www.springframework.org/schema/beans/spring-beans.xsd
>>>>>
>>>>>        http://www.springframework.org/schema/context
>>>>> http://www.springframework.org/schema/context/spring-context.xsd
>>>>>
>>>>>        http://www.springframework.org/schema/util
>>>>> http://www.springframework.org/schema/util/spring-util.xsd";>
>>>>>
>>>>>           <description>
>>>>>
>>>>>                       This file lets CAS know where you've stored the
>>>>> cas.properties file which details some of the configuration options
>>>>>
>>>>>                       that are specific to your environment.  You can
>>>>> specify the location of the file here.  You may wish to place the file
>>>>> outside
>>>>>
>>>>>                       of the Servlet context if you have options that
>>>>> are specific to a tier (i.e. test vs. production) so that the WAR file
>>>>>
>>>>>                       can be moved between tiers without modification.
>>>>>
>>>>>           </description>
>>>>>
>>>>>
>>>>>     <util:properties id="casProperties"
>>>>> location="file:/home/john/cas/cas-overlay-template/etc/cas.properties" />
>>>>>
>>>>>
>>>>>     <context:property-placeholder properties-ref="casProperties" />
>>>>>
>>>>>
>>>>>     <alias name="jsonServiceRegistryDao" alias="serviceRegistryDao" />
>>>>>
>>>>>
>>>>>     <alias name="queryDatabaseAuthenticationHandler"
>>>>> alias="primaryAuthenticationHandler" />
>>>>>
>>>>>     <alias name="dataSource" alias="queryDatabaseDataSource" />
>>>>>
>>>>>
>>>>>     <alias name="defaultPasswordEncoder" alias="passwordEncoder" />
>>>>>
>>>>>
>>>>>     <bean id="dataSource"
>>>>>
>>>>>           class="com.mchange.v2.c3p0.ComboPooledDataSource"
>>>>>
>>>>>           p:driverClass="${database.driverClass}"
>>>>>
>>>>>           p:jdbcUrl="${database.url}"
>>>>>
>>>>>           p:user="${database.user}"
>>>>>
>>>>>           p:password="${database.password}"
>>>>>
>>>>>           p:initialPoolSize="${database.pool.minSize}"
>>>>>
>>>>>           p:minPoolSize="${database.pool.minSize}"
>>>>>
>>>>>           p:maxPoolSize="${database.pool.maxSize}"
>>>>>
>>>>>           p:maxIdleTimeExcessConnections="${database.pool.maxIdleTime}"
>>>>>
>>>>>           p:checkoutTimeout="${database.pool.maxWait}"
>>>>>
>>>>>           p:acquireIncrement="${database.pool.acquireIncrement}"
>>>>>
>>>>>
>>>>> p:acquireRetryAttempts="${database.pool.acquireRetryAttempts}"
>>>>>
>>>>>           p:acquireRetryDelay="${database.pool.acquireRetryDelay}"
>>>>>
>>>>>
>>>>> p:idleConnectionTestPeriod="${database.pool.idleConnectionTestPeriod}"
>>>>>
>>>>>
>>>>> p:preferredTestQuery="${database.pool.connectionHealthQuery}" />
>>>>>
>>>>>
>>>>> </beans>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> 2016-06-03 14:40:07,885 [http-nio-8080-exec-1] DEBUG
>>>>> org.jasig.cas.util.RegexUtils - Pattern
>>>>> http://localhost:8080/CasTest/shiro-cas is a valid regex.
>>>>>
>>>>> 2016-06-03 14:40:07,886 [http-nio-8080-exec-1] DEBUG
>>>>> org.jasig.cas.services.web.RegisteredServiceThemeBasedViewResolver - View
>>>>> resolved: /WEB-INF/view/jsp/default/ui/casLoginView.jsp
>>>>>
>>>>> 2016-06-03 14:40:07,948 [http-nio-8080-exec-1] INFO
>>>>> org.jasig.cas.authentication.PolicyBasedAuthenticationManager -
>>>>> *AcceptUsersAuthenticationHandler* failed authenticating admin
>>>>>
>>>>> 2016-06-03 14:40:07,948 [http-nio-8080-exec-1] DEBUG
>>>>> org.jasig.cas.authentication.PolicyBasedAuthenticationManager -
>>>>> *AcceptUsersAuthenticationHandler* exception details: No user can be
>>>>> accepted because none is defined
>>>>>
>>>>> 2016-06-03 14:40:07,953 [http-nio-8080-exec-1] DEBUG
>>>>> org.jasig.cas.audit.spi.TicketOrCredentialPrincipalResolver - Resolving
>>>>> argument [AuthenticationTransaction] for audit
>>>>>
>>>>> 2016-06-03 14:40:07,954 [http-nio-8080-exec-1] DEBUG
>>>>> org.jasig.cas.audit.spi.TicketOrCredentialPrincipalResolver - Resolving
>>>>> argument [UsernamePasswordCredential] for audit
>>>>>
>>>>> 2016-06-03 14:40:07,957 [http-nio-8080-exec-1] INFO
>>>>> org.jasig.inspektr.audit.support.Slf4jLoggingAuditTrailManager - Audit
>>>>> trail record BEGIN
>>>>>
>>>>> =============================================================
>>>>>
>>>>> WHO: admin
>>>>>
>>>>> WHAT: Supplied credentials: [admin]
>>>>>
>>>>> ACTION: AUTHENTICATION_FAILED
>>>>>
>>>>> APPLICATION: CAS
>>>>>
>>>>> WHEN: Fri Jun 03 14:40:07 IST 2016
>>>>>
>>>>> CLIENT IP ADDRESS: 10.5.5.30
>>>>>
>>>>> SERVER IP ADDRESS: 10.5.5.50
>>>>>
>>>>> =============================================================
>>>>>
>>>>>
>>>>>
>>>>> 2016-06-03 14:40:07,961 [http-nio-8080-exec-1] DEBUG
>>>>> org.jasig.cas.web.flow.AuthenticationViaFormAction - 1 errors, 0 successes
>>>>>
>>>>> org.jasig.cas.authentication.AuthenticationException: 1 errors, 0
>>>>> successes
>>>>>
>>>>> --
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>>>>> To view this discussion on the web visit
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>>>>> For more options, visit
>>>>> https://groups.google.com/a/apereo.org/d/optout.
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>>>> For more options, visit https://groups.google.com/a/apereo.org/d/optout
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>>>>
>>>
>>

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