Got this fixed in the end.
Clean copy and delete work space were both true, but there was a rogue 
workspace which could not be deleted by CC.
Not sure how that situation occurred - perhaps a permission or some other 
issue when CC was trying to delete the workspace.
Anyway, I used sidekick to delete the workspace and forced a build. All 
files appeared from source control it worked fine.
Thanks for your help.

On Tuesday, July 28, 2015 at 3:11:51 PM UTC+1, Ruben Willems wrote:

> I would now change to a separate pc, or another drive or so on a laptop,
> so you do not mess up configuration / caching on the buildserver.
>
> some sourcecontrol systems like tfs / source safe remember where a server 
> / user combo downloads the files to,
> and changing that confuses them. 
>
> so if you're using tfs, it's best to set cleancopy = true
>
>
>
> with kind regards
> Ruben Willems
>
>
>
> On 28 July 2015 at 15:32, andrewc <[email protected] <javascript:>> wrote:
>
>> Oh dear I'm really struggling with this!
>> Tried your suggestion. On the build server in a new area all files get 
>> down loaded from source control (including the ones that are supposedly 
>> missing).
>> Tried checking everything in again, but the problem remains. Some files 
>> just down get copied down to the working dir on the build server.
>> Thanks
>>
>> On Monday, July 27, 2015 at 6:45:40 PM UTC+1, Ruben Willems wrote:
>>
>>> Hi
>>>
>>> in that case I would first get all source from the solution in a new 
>>> place,
>>> another pc or at the build server. 
>>>
>>> check that all projects and files are there, (this will probably be the 
>>> case, but check to be sure)
>>>
>>>
>>> open the solution from there, and include any needed projects and files.
>>> Check it in.
>>>
>>>
>>> now do a force get latest on the programmers pc, and recheck.
>>> just get the solution, do not try to merge it or so.
>>>
>>> this should fix the problem.
>>>
>>>
>>> with kind regards
>>> Ruben Willems
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On 27 July 2015 at 18:04, andrewc <[email protected]> wrote:
>>>
>>>> Some new items have been added to the project in question.
>>>> Have tried checking in the sln but it still fails.
>>>> I'm not filtering source control.
>>>> Any ideas?
>>>> This sln was has had lots of changes with no problem, so confused why 
>>>> this error suddenly occurs?
>>>> Many thanks
>>>>
>>>> On Monday, July 27, 2015 at 3:36:14 PM UTC+1, Ruben Willems wrote:
>>>>
>>>>> Has a project been added,renamed or moved?
>>>>> is so, make sure that the solution is also checked in.
>>>>>
>>>>>
>>>>> another option is that you use the filtered source control
>>>>> http://www.cruisecontrolnet.org/projects/ccnet/wiki/Filtered
>>>>>
>>>>> and that the project is on a path that is excluded.
>>>>>
>>>>>
>>>>> with kind regards
>>>>> Ruben Willems
>>>>>
>>>>>
>>>>> On 27 July 2015 at 15:59, andrewc <[email protected]> wrote:
>>>>>
>>>>>> We have many solutions building reliably for months, but after recent 
>>>>>> check ins one is failing with :
>>>>>> error MSB3202: The project file "xxx" was not found.
>>>>>> xxx is a local file path to a proj file on the CI server.
>>>>>> After checking the CI server the proj file is indeed missing, as if 
>>>>>> it no longer gets copied down from source control.
>>>>>> Any ideas or help is much appreciated.
>>>>>> The build works fine on the local dev machine.
>>>>>>
>>>>>> We're using version : 1.8.5.0
>>>>>>
>>>>>> Thanks
>>>>>>
>>>>>> -- 
>>>>>>
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>>>>>>
>>>>>
>>>>>
>>>
>

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