Thanks, Jon. Finding the peaks is not the problem; the *.ha file contains those, as do the pdf. map sections.
It is that I don’t know how to properly fix that Interface Configuration file to have the PS distiller and mapslicer display the output. This problem occurs on 2 independent CCP4i installations on different Windows 10/11 computers.... Thx, BR From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Jon Cooper Sent: Sunday, February 18, 2024 09:39 To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Interface Configuration and Mapslicer Question You could search for peaks of decreasing height by stepping back through through alphabet with your text searches. Of course, peakmax will do a good job of finding them anyway. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com <mailto:jon.b.coo...@protonmail.com> Sent from Proton Mail mobile -------- Original Message -------- On 18 Feb 2024, 17:35, Jon Cooper < 0000488a26d62010-dmarc-requ...@jiscmail.ac.uk <mailto:0000488a26d62010-dmarc-requ...@jiscmail.ac.uk> > wrote: I think we used to use mapsig for printing map sections with single characters to show peak height. You could set it so that low or no density was just a dot and higher values were 0...9 ... A... Z ... * #, etc. up to the maximum or maybe it was another one of Ian's programs. It made peak searching with a text editor pretty easy just by searching for the characters corressponding to the high values. I don't know if that's any use. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com <mailto:jon.b.coo...@protonmail.com> Sent from Proton Mail mobile -------- Original Message -------- On 18 Feb 2024, 03:29, Bernhard Rupp < hofkristall...@gmail.com <mailto:hofkristall...@gmail.com> > wrote: Der CCP4 Experts & Developers, I am exercising in CCP4i (Windows, 8.0.017) some old-fashioned native Patterson maps for NCS analysis, using ‘patterson’ of FFT which produces the *.map (dump) file and 3 Harker *.plt files. Unfortunately, epic fail on the display of the results. The ghostview (cf. image) I cannot install (some dll error) and it also seems deprecated. As a workaround I use pltdev to generate a *.ps file and distil it into a pdf and then display. Works, but ghostly 20th century.... ...or I display the map directly in Coot and eyeball the peaks....surprisingly neat and educational. Q1: Do we have a direct way in the GUI to convert/display these CCP4 plt files? I failed adding as PSviewer "C:\Program Files (x86)\Adobe\Acrobat DC\Acrobat\acrodist.exe" in the interface configuration (problem maybe the blanks). But the entry in the Interface Configuration (config.def) seems sensibly quoted: PS_PREVIEW_NAME,4 _text acrodist.exe PS_PREVIEW_COM,4 _text "C:\Program Files (x86)\Adobe\Acrobat DC\Acrobat\acrodist.exe" Q2: how do I properly enter the path to the distiller in the interface configuration? Mapslicer is also uncooperative (cf. img). The Interface Configuration entry informs me that “ccp4mapwish [file join [GetEnvPath CCP4I_TOP] bin mapslicer.tcl]”. Q3: How should I fix this (I swear I did not wish with the installation)? In search of a more modern approach to this map analysis I also tried CCP4i2 and Phenix, but there was no task like “Make a native Patterson and show me the *&%# map” to be found. Q4: would this be a useful task to provide? (a selfrotation task exists in ccp4i2 via molrep, and there, PS viewing works just fine). Cheers, BR ------------------------------------------------------ Bernhard Rupp, Psilosopher <https://psilosophy.org/> https://psilosophy.org/ <https://www.hofkristallamt.org/> https://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofkristallamt.org +1 925 209 7429 +43 676 571 0536 ------------------------------------------------------ All models are wrong but some are useful. ------------------------------------------------------ _____ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> &A=1 _____ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> &A=1 _____ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> &A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
