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In CONTACT, you can specify the distance limits from 0 to 2.4 angstroms
to list out only the short contacts...
Hope this helps..
Isai
ursula schulze-gahmen wrote:
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I am analysing intermolecular interactions between a protein and its
ligand. I used the ccp4 program CONTACT so far. I would also like to
look at the possibility that there might be unfavorably close
contacts. Is there a program that can do this analysis and identify
unfavorable contacts, or do I just need to look at all the
interactions and figure out if some of them are too close.
Ursula
