We just discovered this bug here in York too.
It is fixed inthe latest pre-release - Garib is away, but I wonder if it
is because in the $CLIBD/monomers/n NAG-b-D is named NAG-B-D ie the B is
upper case
Try renaming it and see if that is a fix.
Eleanor
Kurt Whizler wrote:
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I am trying to connect two sugars by glycosidic bond with the
following in the coordinate file:
MODRES GAL A 2 GAL-b-D RENAME
MODRES NAG A 3 NAG-b-D RENAME
LINK NAG A 3 GAL A 2 BETA1-3
Get an error message:
I am reading library. Please wait.
mon_lib.cif
WARNING : link:BETA1-3 is found dist = 1.698 ideal_dist= 1.439
ch:AA res: 2 GAL at:C1 .->Aa res: 3 NAG at:O3 .
ERROR: wrong tree structure .....
IERR = 1
I tried all possible combination for geometric restraints for sugar:
define as in file or by distance with the same result.
Can anybody tell what is wrong?
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