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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi, What do you mean with "is not big enough"? Not big enough for what purpose? The conformation of that PDB is absolutely reasonable, in chemical terms. Depending on your purposes, that I don't quite understand, you may prefer a "flat" four-way junction, as found in complex with proteins like in PDB 1c7y (you need to build some symmetry-related molecules to see the flatten four-way junction, which in this case is not continuous) I hope this may help. Cheers, Miguel Jie Li, PhD escribió el 23/11/05 23:14 : > *** For details on how to be removed from this list visit the *** > *** CCP4 home page http://www.ccp4.ac.uk *** > > > Firstly, thanks a lot to everyone who concerns. > The problem is, for example, when I tried a 4-way junction model like > 1DCW.pdb, I found the space in the middle of junction is not big enough. > If I move DNA strands manually, it will make the conformation > unreasonable. I dont know how to deal with such things. > Thanks again. > > > > This e-mail message may contain information that is > confidential and/or privileged. If you are not the intended > recipient, any use, disclosure, copying, or communication > of the contents of this message is prohibited. If this > message was received in error, please delete the message > and any attachments from your computer. Thank you. > > - -- Miguel Ortiz Lombardía Centro de Investigaciones Oncológicas C/ Melchor Fernández Almagro, 3 28029 Madrid, Spain Tel. +34 912 246 900 Fax. +34 912 246 976 email: [EMAIL PROTECTED] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Son españoles los extranjeros que obtengan carta de naturaleza y los que sin ella hayan ganado vecindad en cualquier pueblo de la República, en los términos y condiciones que prescriban las leyes. Constitución de la República Española (Art. 23.4), 1931 -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.1 (GNU/Linux) iD8DBQFDhWt7F6oOrDvhbQIRArYZAKCKXr8JIve1x+IYbhwOImhLOmBLvACfYxYA 2E606JH+iXE9HOEZLSdBz28= =hm0+ -----END PGP SIGNATURE-----
