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Hi Folks,
Anyone ever seen anything like this:
" Taking the results from Round 2
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
Chains 18, Residues 250, Connectivity Index 0.86
7 of these (123 residues) have been docked in sequence.
<!--SUMMARY_END--></FONT></B>
------------------------------------------------------
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
QUITING ... PROGRAM TO BLAME: ARP_WARP_MODE_UPDATE_BUILD
QUITING ... PROGRAM TO BLAME: ARP_WARP_MODE_UPDATE_BUILD
QUITING ... PROGRAM TO BLAME: ARP_WARP_MODE_UPDATE_BUILD
*** Look for error message at file:
/tmp/00002/2006105344/2006105344_warpNtrace_build.last.log
*** Look for error message at file:
/tmp/00002/2006105344/2006105344_warpNtrace_build.last.log
*** Look for error message at file:
/tmp/00002/2006105344/2006105344_warpNtrace_build.last.log
<!--SUMMARY_END--></FONT></B>
[1] 24324
CCP4I ERROR:Def file does not exist NOT_DEFINED"
ok, I know you probably have but this is the end of the offending log file -
all you have is:
" Comments: New atoms will be selected if there is any atom exists within 3.30
Comments: New atoms will not be put closer than 2.30 to each other
Comments: New atoms will have B-factors assigned on the basis of MAPFIND
-- density hight as expected for resolution range 1.60 20.00
-- MAPFIND is assumed to be Fo-Fc map in absolute scale
Comments: New atoms will have chain name Z and residue name DUM
-- No real space refinement will be made
Opening file: arp_out.pdb
Non-standard orthogonalisation in PDB header
0.020995 -0.006166 -0.009881
0.000000 0.021869 -0.003710
0.000000 0.000000 0.023009
***** ERROR *****
Closing file arp_out.pdb"
The data are good, and the map is nice, but with the spacegroup being P1 the
completeness is less than ideal at higher (> 2A) resolution...
Any hints as to what I could do to fix this?
Thanks in advance,
Graeme
