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I am trying to recompile ccp4 version 6 on a irix platform. I needed to
increse the MAXNET Parameter from the default. We are running 6.5 6.5.20f.
I sourced the ccp4.setup file, ran configure irix64, and got the
following errors.
==================================================================
/bin/sh ./libtool --mode=link CC -O -OPT:Olimit_opt=on
-LANG:std -64 -mips3 -w -L/usr/local/ccp4_6/ccp4-6.0/lib -lmmdb -o
superpose superpose.o libssm.la -lm
CC -O -OPT:Olimit_opt=on -LANG:std -64 -mips3 -w -o superpose
superpose.o -L/usr/local/ccp4_6/ccp4-6.0/lib ./.libs/libssm.a -lmmdb -lm
C++ prelinker: warning: could not locate library -lmmdb; assuming
/usr/lib/libmmdb.a
ld64: FATAL 9 : I/O error (-lmmdb): No such file or directory
*** Error code 2 (bu21) (ignored)
if test -d src; then cd src; make ; else true; fi
CC -I/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_
-I/usr/local/ccp4_6/ccp4-6.0/lib/src
-I/usr/local/ccp4_6/ccp4-6.0/lib/src/mmdb -O -OPT:Olimit_opt=on
-LANG:std -64 -mips3 -w -c -o pdbcur.o
/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_/pdbcur.cpp
eval CC -I/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_
-I/usr/local/ccp4_6/ccp4-6.0/lib/src
-I/usr/local/ccp4_6/ccp4-6.0/lib/src/mmdb ${mmdb_app_FLAGS-"-O
-OPT:Olimit_opt=on -LANG:std -64 -mips3 -w"} -c -o pdbcur.o
/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_/`basename pdbcur.o .o`.cpp
CC -I/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_
-I/usr/local/ccp4_6/ccp4-6.0/lib/src
-I/usr/local/ccp4_6/ccp4-6.0/lib/src/mmdb -O -OPT:Olimit_opt=on
-LANG:std -64 -mips3 -w -c -o pcur_funcs.o
/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_/pcur_funcs.cpp
eval CC -I/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_
-I/usr/local/ccp4_6/ccp4-6.0/lib/src
-I/usr/local/ccp4_6/ccp4-6.0/lib/src/mmdb ${mmdb_app_FLAGS-"-O
-OPT:Olimit_opt=on -LANG:std -64 -mips3 -w"} -c -o pcur_funcs.o
/usr/local/ccp4_6/ccp4-6.0/src/mmdb_app_/`basename pcur_funcs.o .o`.cpp
3298597:/usr/lib32/cmplrs/nm_elf: rld: Fatal Error: Cannot Successfully
map soname 'be.so' under any of the filenames
/usr/local/ccp4_6/ccp4-6.0/lib/be.so:/usr/local/lib/be.so:/usr/lib32/be.so:/usr/lib32/internal/be.so:/lib32/be.so:/opt/lib32/be.so:/usr/local/ccp4_6/ccp4-6.0/lib/be.so.1:/usr/local/lib/be.so.1:/usr/lib32/be.so.1:/usr/lib32/internal/be.so.1:/lib32/be.so.1:/opt/lib32/be.so.1:
C++ prelinker: warning: no output produced by nm -- possible
configuration problem
C++ prelinker: warning: nm returned a nonzero error status
ld64: ERROR 33 : Unresolved text symbol
"_S_refill__Q2_3std45__default_alloc_template__pt__13_XCbL10XCiL10SGUl"
-- 1st referenced by pcur_funcs.o.
Use linker option -v to see when and which objects, archives and
dsos are loaded.
ld64: ERROR 33 : Unresolved text symbol
"std::operator<<(std::basic_ostream<char,std::char_traits<char> >&,const
std::basic_string<char,std::char_traits<char>,std::allocator<char> >&)"
-- 1st referenced by pcur_funcs.o.
Use linker option -v to see when and which objects, archives and
dsos are loaded.
ld64: ERROR 33 : Unresolved data symbol
"_S_free_list__Q2_3std45__default_alloc_template__pt__13_XCbL10XCiL10"
-- 1st referenced by pcur_funcs.o.
Use linker option -v to see when and which objects, archives and
dsos are loaded.
ld64: INFO 152: Output file removed because of error.
*** Error code 2 (bu21)
*** Error code 1 (bu21)
--
thanks,
Danny G Smith
---------------------------------------------------------
OMRF Intramural Computer Manager / Sr UNIX System Admin
---------------------------------------------------------
Oklahoma Medical Research Foundation
Mon-Wed phone(405)271-6130 / Wed-Fri phone(405)271-8954
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