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Garib Murshudov <[EMAIL PROTECTED]> wrote on 06/13/2006 02:21:06 PM:

> If there are element names on the columns 77-78 then refmac deals
> with them otherwise
> dictionary should be available and then refmac takes element name
> from dictionary. If dictionary is not available
> then it is tough. refmac tries to extract element name from atom
> names (have you ever tried to do this. code becomes
> very very very long if you want to have a general solution that does
> not exist)
>
> Garib
>


Hi Garib -

Since Dirk had asked for a program that could get element names from the
monomer library, I figured that Refmac wouldn't have to be guessing based
on the atom name.  Will setting cycles to zero in an idealization
refinement like I suggested produce a pdb file with xyz's and B's
unchanged?

Thanks,

Matt

--
Matthew Franklin                     phone:(917)606-4116
Senior Scientist, ImClone Systems      fax:(212)645-2054
180 Varick Street, 6th floor
New York, NY 10014



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