I have two questions related to Mr. Bump.
- Can we specify a specific database of structures for the input? For example, we have a dozen in house structures of a protein with different ligands that we would like to try for
2. Our cluster is not connected to the internet, but we have local copies of PDB, and other protein sequence databases. Can we run Mr. Bump locally? How would we do this?
Regards,
Kendall
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Kendall W. Nettles, PhD
Assistant Professor
Department of Biochemistry
The Scripps Research Institute
5353 Parkside Dr.
Jupiter Fl 33458
office 561-799-8851
fax 561-799-8957
cell 561-306-7566
