pdbset xyzin all.pdb xyzout.pdb
EXCL SIDE

Doc: Exclude all non protein and side chain atoms past CB /i.e./ create
a POLYALA model. /N.B./ the residue names are NOT changed.


More useful for MR is CHAINSAW

It renames the sequence according to your favorite alignment tool..

Eleanor

pengpeng hao wrote:

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>
>Dear All
>
>Last time somebody mentioned about a tool for changing all the residues to 
>ALA, but I forgot the name of that program.
>So could anybody tell me which program I can use.
>Thanks
>
>Best
>
>Hao
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